Bug 805266

Summary:	sci-libs/gdal-3.3.1 and sci-libs/gdal-3.4.1: emake failed - error adding symbols: file in wrong format
Product:	Gentoo Linux	Reporter:	vince.ice <dev>
Component:	Current packages	Assignee:	Sci-geo Project <sci-geosciences>
Status:	RESOLVED OBSOLETE
Severity:	normal	CC:	sam
Priority:	Normal
Version:	unspecified
Hardware:	AMD64
OS:	Linux
See Also:	https://bugs.gentoo.org/show_bug.cgi?id=887735
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	Build log emerge --info '=sci-libs/gdal-3.3.1::gentoo' emerge -pqv '=sci-libs/gdal-3.3.1::gentoo' Ebuild environment Workaround - config.status

Description vince.ice 2021-07-30 16:31:29 UTC

x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libdl.a when searching for -ldl
x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libsqlite3.so when searching for -lsqlite3
x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpcre.so when searching for -lpcre
x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libOpenCL.so when searching for -lOpenCL
x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libxml2.so when searching for -lxml2

x86_64-pc-linux-gnu/bin/ld: //usr/lib/../lib/libstdc++.so: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status

make[1]: *** [GNUmakefile:75: libgdal.la] Error 1
make[1]: Leaving directory '/home/vince/temp/portage/sci-libs/gdal-3.3.1/work/gdal-3.3.1'
make: *** [GNUmakefile:88: check-lib] Error 2
make: Leaving directory '/home/vince/temp/portage/sci-libs/gdal-3.3.1/work/gdal-3.3.1'
ERROR: sci-libs/gdal-3.3.1::gentoo failed (compile phase):
   emake failed

Comment 1 vince.ice 2021-07-30 16:33:46 UTC

Created attachment 728367 [details]
Build log

Comment 2 vince.ice 2021-07-30 16:34:33 UTC

Created attachment 728370 [details]
emerge --info '=sci-libs/gdal-3.3.1::gentoo'

Comment 3 vince.ice 2021-07-30 16:34:57 UTC

Created attachment 728373 [details]
emerge -pqv '=sci-libs/gdal-3.3.1::gentoo'

Comment 4 vince.ice 2021-07-30 16:35:30 UTC

Created attachment 728376 [details]
Ebuild environment

Comment 5 vince.ice 2021-08-06 12:40:04 UTC

I manually modified config.status as to change:
    -L/usr/lib
to 
    -L/usr/lib64

(see diff attached)
Then compiled again with:
    ebuild /usr/portage/sci-libs/gdal/gdal-3.3.1.ebuild compile
and it worked.

Comment 6 vince.ice 2021-08-06 12:40:50 UTC

Created attachment 730822 [details, diff]
Workaround - config.status

Comment 7 vince.ice 2022-03-14 08:21:06 UTC

Problem persists in version 3.4.1
Workaround still works

Comment 8 Sam James archtester

2022-03-14 09:12:46 UTC

Need new build.log as lots has changed since.

Comment 9 Sam James archtester

2022-03-14 11:53:00 UTC

(In reply to Sam James from comment #8)
> Need new build.log as lots has changed since.

FWIW, I did actually start a lot of work on this, but got bogged down in autotools hell with the huge amount of macros which needed fixing and doing the logic properly.

Upstream were very nice so no issue there, I just ended up moving on to something else. They're moving to CMake now too so this will resolve itself.

There is still a (huge) patch being applied though (gdal-3.3.0-libdir.patch) for the time being.

Comment 10 Sam James archtester

2022-07-09 05:20:02 UTC

Obsolete given move to CMake in stable now.