| Summary: | sci-chemistry/dssp-2.2.1-r2 - mkdssp.cpp:(<snip>) undefined reference to boost::iostreams::detail::zlib_base::reset(bool, bool) | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Pacho Ramos <pacho> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | treecleaner |
| Priority: | Normal | Keywords: | PMASKED |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://bugs.gentoo.org/show_bug.cgi?id=808669 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | 679142 | ||
| Bug Blocks: | |||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tar.bz2 sci-chemistry:dssp-2.2.1-r2:20210715-215141.log temp.tar.bz2 |
||
|
Description
Toralf Förster
2021-07-16 09:10:22 UTC
Created attachment 724144 [details]
emerge-info.txt
Created attachment 724147 [details]
emerge-history.txt
Created attachment 724150 [details]
environment
Created attachment 724153 [details]
etc.portage.tar.bz2
Created attachment 724156 [details]
sci-chemistry:dssp-2.2.1-r2:20210715-215141.log
Created attachment 724159 [details]
temp.tar.bz2
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd93b01be38831d1ef5a4d2518c351777c86d9a7 commit bd93b01be38831d1ef5a4d2518c351777c86d9a7 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-08-29 10:38:18 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-08-29 10:38:18 +0000 profiles: last-rite sci-chemistry/dssp Bug: https://bugs.gentoo.org/802417 Bug: https://bugs.gentoo.org/808669 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 7 +++++++ 1 file changed, 7 insertions(+) The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4e4e045da2570733e3a7cf50ed1712945d44dc2f commit 4e4e045da2570733e3a7cf50ed1712945d44dc2f Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2021-09-02 11:59:21 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2021-09-02 12:00:49 +0000 sci-chemistry/dssp: Bump to 3.0.11 It is the latest version that seems to work with gmx do_dssp from my tests, also the one packaged in Fedora currently Closes: https://bugs.gentoo.org/802417 Closes: https://bugs.gentoo.org/808669 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/dssp/Manifest | 1 + sci-chemistry/dssp/dssp-3.0.11.ebuild | 42 +++++++++++++++++++++++++++++++++++ 2 files changed, 43 insertions(+) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=54a9ba7ce3518fd4974ddd7834584a0c3dad9980 commit 54a9ba7ce3518fd4974ddd7834584a0c3dad9980 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2021-09-02 11:50:57 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2021-09-02 12:00:48 +0000 sci-chemistry/dssp: Needs boost with zlib and bzip2 support Closes: https://bugs.gentoo.org/802417 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=86a55f2707b1daa78e8d7e0666756e95ef588d47 commit 86a55f2707b1daa78e8d7e0666756e95ef588d47 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2021-09-02 11:48:56 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2021-09-02 12:00:44 +0000 sci-chemistry/dssp: Fix boost compat for dssp-2 dssp-2 is still needed by gromacs, try to keep it whenever possible then Closes: https://bugs.gentoo.org/802417 Closes: https://bugs.gentoo.org/808669 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/dssp/dssp-2.2.1-r3.ebuild | 41 +++++++++++++++++++++++++++++++++ sci-chemistry/dssp/files/30-dssp | 1 + 2 files changed, 42 insertions(+) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=73c30608dfed594378b78b10858023a7f0a19686 commit 73c30608dfed594378b78b10858023a7f0a19686 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2021-09-02 11:44:31 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2021-09-02 12:00:42 +0000 sci-chemistry/dssp: Bump to 4.0.1 Closes: https://bugs.gentoo.org/679142 Closes: https://bugs.gentoo.org/802417 Closes: https://bugs.gentoo.org/808669 Package-Manager: Portage-3.0.22, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/dssp/Manifest | 1 + sci-chemistry/dssp/dssp-4.0.1_p20210831.ebuild | 33 ++++++++++++++++++++++++++ 2 files changed, 34 insertions(+) |