Bug 801223

Summary:	sci-libs/atlas-3.10.2 - multiple definition of `ATL_SetAtomicCount'; libatlas.a(ATL_SetAtomicCount_arch.o):ATL_SetAtomicCount_arch.c:(.text+0x0): first defined here
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-libs:atlas-3.10.2:20210708-082622.log.bz2

Description Toralf Förster gentoo-dev

2021-07-08 16:24:38 UTC

cd bin/ ; ./xatlas_build -1 0 -a 1 -l 0
make[2]: Entering directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared/bin'
make[2]: *** No rule to make target '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS//CONFIG/ARCHS/UNKNOWNx8664AVXMAC.tar.bz2', needed by '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared/ARCHS/UNKNOWNx8664AVXMAC'.  Stop.
make[2]: Leaving directory '/var/tmp/portage/sci-libs/atlas-3.10.2/work/ATLAS_shared/bin'


BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 10:26

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-j3-20210702-091244

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.1.0 *
clang version 12.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.0
Python 3.9.6
Available Ruby profiles:
  [1]   ruby26 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.53.0 *
The following VMs are available for generation-2:
1)	IcedTea JDK 3.16.0 [icedtea-bin-8]
2)	JamVM JDK 2.0.0 [jamvm]
*)	AdoptOpenJDK 8.292_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8 
  [2]   jamvm 
  [3]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4
  HEAD of ::gentoo
commit 6b149668e42ab9273b0a6ff0a4342a30ae3a8491
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Jul 8 06:51:24 2021 +0000

    2021-07-08 06:51:23 UTC

emerge -qpvO sci-libs/atlas
[ebuild  N    ] sci-libs/atlas-3.10.2  USE="fortran threads -doc -generic -lapack -static-libs"

Comment 1 Toralf Förster gentoo-dev

2021-07-08 16:24:39 UTC

Created attachment 722758 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2021-07-08 16:24:41 UTC

Created attachment 722761 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2021-07-08 16:24:42 UTC

Created attachment 722764 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2021-07-08 16:24:43 UTC

Created attachment 722767 [details]
etc.portage.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2021-07-08 16:24:45 UTC

Created attachment 722770 [details]
logs.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2021-07-08 16:24:46 UTC

Created attachment 722773 [details]
sci-libs:atlas-3.10.2:20210708-082622.log.bz2