Bug 794868

Summary:	sci-biology/fasttree-2.1.11 - FastTree-2.1.11.c:(.text+<snip>): undefined reference to mm_sum
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-biology:fasttree-2.1.11:20210608-033818.log temp.tar.bz2

Description Toralf Förster gentoo-dev

2021-06-08 07:09:43 UTC

: && /usr/bin/x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -DOPENMP -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DOPENMP -fopenmp    -rdynamic CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o -o FastTree  -lm && :
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_multiply_sum':
FastTree-2.1.11.c:(.text+0x2a5e0): undefined reference to `mm_sum'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_multiply3_sum':
FastTree-2.1.11.c:(.text+0x2a745): undefined reference to `mm_sum'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_dot_product_rot':
FastTree-2.1.11.c:(.text+0x2a8f5): undefined reference to `mm_sum'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-j3-20210607-212225

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.1.0 *
Python 3.9.5
  HEAD of ::gentoo
commit 77b2469bdd445c8c4d36ef4ff696ef81fd9b6267
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Jun 8 03:05:16 2021 +0000

    2021-06-08 03:05:15 UTC

emerge -qpvO sci-biology/fasttree
[ebuild  N    ] sci-biology/fasttree-2.1.11  USE="openmp -double-precision" CPU_FLAGS_X86="sse3"

Comment 1 Toralf Förster gentoo-dev

2021-06-08 07:09:44 UTC

Created attachment 714408 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2021-06-08 07:09:45 UTC

Created attachment 714411 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2021-06-08 07:09:47 UTC

Created attachment 714414 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2021-06-08 07:09:48 UTC

Created attachment 714417 [details]
etc.portage.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2021-06-08 07:09:49 UTC

Created attachment 714420 [details]
logs.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2021-06-08 07:09:50 UTC

Created attachment 714423 [details]
sci-biology:fasttree-2.1.11:20210608-033818.log

Comment 7 Toralf Förster gentoo-dev

2021-06-08 07:09:51 UTC

Created attachment 714426 [details]
temp.tar.bz2