| Summary: | dev-libs/boost: broken with Python 3.10+ (was: media-gfx/openvdb-7.1.0-r1 fails to compile (Unable to find boost_python310, boost_python3 or boost_python)) | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Alessandro Barbieri <lssndrbarbieri> |
| Component: | Current packages | Assignee: | David Seifert <soap> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | agrigo2001, dschridde+gentoobugs, ionen, proxy-maint, sam, waebbl-gentoo |
| Priority: | Normal | Keywords: | PullRequest |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| URL: | https://github.com/AcademySoftwareFoundation/openvdb/pull/1274 | ||
| See Also: |
https://bugs.gentoo.org/show_bug.cgi?id=803032 https://github.com/gentoo/gentoo/pull/23185 |
||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge_info
openvdb-7.1.0-r1:20210515-115119.log |
||
|
Description
Alessandro Barbieri
2021-05-15 12:23:18 UTC
Created attachment 708750 [details]
emerge_info
emerge --info
Created attachment 708753 [details]
openvdb-7.1.0-r1:20210515-115119.log
build log
I thought we masked Python on it for this reason? Boost’s Python support is broken (In reply to Sam James from comment #3) > I thought we masked Python on it for this reason? Boost’s Python support is > broken fwiw it's only a stable mask But both openvdb[python] and even openvdb[python,numpy] built fine for me, haven't looked further into what might've happened. dev-libs/boost-1.76.0::gentoo was built with the following: USE="icu numpy python threads zlib zstd -bzip2 -context -debug -doc -lzma -mpi -nls -static-libs -tools" ABI_X86="(64) -32 (-x32)" PYTHON_TARGETS="python3_9 -python3_7 -python3_8" media-gfx/openvdb-7.1.0-r1::gentoo was built with the following: USE="abi7-compat numpy python utils -abi6-compat -doc -static-libs -test" ABI_X86="(64)" CPU_FLAGS_X86="avx sse4_2" PYTHON_SINGLE_TARGET="python3_9 -python3_7 -python3_8" The problem seems to be -- Found Python: /usr/include/python3.10) (found suitable version "3.10.0", minimum required is "2.7") although python3_8 is requested. Changing -DPython_EXECUTABLE= to -DPython3_EXECUTABLE= might solve this issue. Python_EXECUTABLE is accepted by the first interpreter found, while Python3_EXECUTABLE also eventually finds another version than the requested first, but in the end get's the passed parameter correct. Ah thanks, I can reproduce now. I'll start keeping python3.10 around by default in my test env to catch these. (In reply to Ionen Wolkens from comment #6) > Ah thanks, I can reproduce now. > > I'll start keeping python3.10 around by default in my test env to catch > these. Note, it's not specific to python-3.10 but can happen anytime, as soon as more than one python version is installed. This also affects media-gfx/openvdb-8.1.0 PYTHON_SINGLE_TARGET=python3_9:
-- ----------------------------------------------------
-- ------------ Configuring OpenVDBPython -------------
-- ----------------------------------------------------
-- Found Python: /usr/include/python3.9) (found suitable version "2.7", minimum required is "2.7")
CMake Error at openvdb/openvdb/python/CMakeLists.txt:162 (message):
Unable to find boost_python27, boost_python2 or boost_python.
Portage 3.0.28 (python 3.9.7-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-11.2.0, glibc-2.33-r7, 5.14.15 x86_64)
=================================================================
System Settings
=================================================================
System uname: Linux-5.14.15-x86_64-AMD_Ryzen_5_2400G_with_Radeon_Vega_Graphics-with-glibc2.33
KiB Mem: 14120352 total, 1153776 free
KiB Swap: 7059452 total, 6691680 free
Timestamp of repository gentoo: Fri, 05 Nov 2021 08:45:01 +0000
Head commit of repository gentoo: 0e9ffe1a9ee4e31146e99ef70144eb0557107b2d
Timestamp of repository haskell: Sun, 31 Oct 2021 10:36:19 +0000
Head commit of repository haskell: 432e49554d881c3e64b6475ccc10d46dc6773be7
Head commit of repository local: 2d87deda70a5e0167d8ba10d68067821a1ce73ae
sh bash 5.1_p8
ld GNU ld (Gentoo 2.37_p1 p0) 2.37
ccache version 4.4.2 [disabled]
app-shells/bash: 5.1_p8::gentoo
dev-java/java-config: 2.3.1::gentoo
dev-lang/perl: 5.34.0-r5::gentoo
dev-lang/python: 2.7.18_p13::gentoo, 3.9.7_p1::gentoo, 3.10.0_p1::gentoo
dev-lang/rust: 1.56.1::gentoo
dev-util/ccache: 4.4.2::gentoo
dev-util/cmake: 3.21.4::gentoo
sys-apps/baselayout: 2.8::gentoo
sys-apps/sandbox: 2.29::gentoo
sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo
sys-devel/automake: 1.13.4-r2::gentoo, 1.16.5::gentoo
sys-devel/binutils: 2.37_p1::gentoo
sys-devel/gcc: 11.2.0::gentoo
sys-devel/gcc-config: 2.4::gentoo
sys-devel/libtool: 2.4.6-r6::gentoo
sys-devel/make: 4.3::gentoo
sys-kernel/linux-headers: 5.14::gentoo (virtual/os-headers)
sys-libs/glibc: 2.33-r7::gentoo
Repositories:
gentoo
location: /var/cache/portage/gentoo
sync-type: rsync
sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage
priority: -1000
sync-rsync-verify-jobs: 1
sync-rsync-verify-max-age: 24
sync-rsync-extra-opts: --new-compress
sync-rsync-verify-metamanifest: yes
haskell
location: /var/db/repos/haskell
sync-type: git
sync-uri: https://github.com/gentoo-mirror/haskell.git
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crossdev
location: /var/cache/portage/crossdev
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priority: 100
local
location: /var/cache/portage/local
sync-type: git
sync-uri: https://github.com/devurandom/gentoo-overlay.git
masters: gentoo
priority: 1000
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -march=znver1"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.8/conf"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-pipe -O2 -march=znver1"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildsyspkg cgroup compressdebug config-protect-if-modified distlocks ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.fau.de/gentoo http://ftp.halifax.rwth-aachen.de/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j6 -l4"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="--new-compress"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/tmp"
USE="7z 7zip X a52 aac aacplus aacs acl acpi activities aio alsa amd64 amr appindicator appstream aptx archive audit avahi avif ayatana bdplus blake2 blas bluetooth bluray bpf branding brotli bs2b btrfs bzip2 cairo caps cdda cddb cdio cdr celt cet chromaprint cjk cli clipboard color-management colord conntrack crypt cups curl d3d9 dav1d dbus declarative device-mapper dirac djvu dmabuf dri drm dts dvb dvd dvdr ed25519 editorconfig egl elf emboss emoji encode epub evdev exif faudio fax fdk ffmpeg fftw filecaps firefox firewalld fish-completion fits flac fontconfig fontforge fortran fribidi gamepad gbm gdal gdbm geoclue geolocation gif git gles2 gles3 gmp gnome-online-accounts gnupg google googledrive gpg gps graphicsmagick gstreamer gtk gtk3 gui gzip harfbuzz hdf5 heif http2 hugepages ibus iconv icu id3tag idn imlib inotify introspection ipv6 iwd jemalloc jpeg jpeg2k json kde kipi kms kwallet lapack latex lcms ldac libatomic libglvnd libidn2 libinput libnotify libproxy libsecret libsoxr libtirpc libvirt lm-sensors lrz lto lv2 lvm lz4 lzma lzo mad magic man mariadb markdown mbim mercurial mjpeg mng mobi modemmanager modplug mp3 mp4 mpeg mplayer mpris mtp multilib mysql ncurses netlink networkmanager nftables nls nptl numa office ofono ofx ogg openal opencl opencv openexr opengl openh264 openmax openmp opus otf pam pango pcap pch pcre pcre2 pdf pgo pipewire pixman pkcs11 pkcs7 plasma pm-utils png policykit postscript ppds prison pulseaudio python qml qrcode qt5 rav1e raw rdp readline rtmp rubberband samba sasl scanner schroedinger screencast sctp sdl sdl2 seatd seccomp semantic-desktop share smartcard snappy sparse speech speex spell spice srt ssl startup-notification steamruntime stemmer svg systemd tbb teamd telemetry telepathy tga theora threads thunderbolt tiff timezone tmux tpm truetype udev udisks uinput unicode unwind upnp upnp-av upower usb utempter v4l v4l2 vaapi vamp vdpau vkd3d vorbis vpx vtk vulkan wasm wavpack wayland webchannel webengine webp widgets wireguard wmf woff2 wps x264 x265 xattr xcb xinerama xkb xml xmp xrandr xscreensaver xv xvid xwayland xxhash xz yaml zeroconf zeromq zimg zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2019" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="joystick libinput" KERNEL="linux" L10N="de de-DE en en-GB ar fa tr ja ko zh zh-CN zh-TW" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver scripting-javascript wiki-publisher" LLVM_TARGETS="AMDGPU BPF RISCV WebAssembly" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1 lua5-4 luajit" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9 pypy pypy3" QEMU_SOFTMMU_TARGETS="riscv32 riscv64 x86_64" QEMU_USER_TARGETS="riscv32 riscv64" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu virgl" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, RUSTFLAGS
=================================================================
Package Settings
=================================================================
dev-lang/python-2.7.18_p13::gentoo was built with the following:
USE="bluetooth gdbm ncurses readline sqlite ssl xml (-berkdb) -build -examples -hardened -tk -verify-sig -wininst" ABI_X86="(64)"
CFLAGS="-pipe -O2 -march=znver1 -fwrapv"
CXXFLAGS="-pipe -O2 -march=znver1 -fwrapv"
dev-lang/python-3.9.7_p1::gentoo was built with the following:
USE="bluetooth gdbm ncurses readline sqlite ssl xml -build -examples -hardened -test -tk -verify-sig -wininst" ABI_X86="(64)"
CFLAGS="-pipe -O2 -march=znver1 -fwrapv"
CXXFLAGS="-pipe -O2 -march=znver1 -fwrapv"
FEATURES="userfetch userpriv xattr fakeroot protect-owned unmerge-orphans buildsyspkg parallel-install cgroup distlocks mount-sandbox binpkg-docompress sandbox unmerge-logs ebuild-locks multilib-strict ipc-sandbox qa-unresolved-soname-deps parallel-fetch compressdebug config-protect-if-modified fixlafiles merge-sync assume-digests preserve-libs binpkg-logs news binpkg-multi-instance usersandbox unknown-features-warn usersync sfperms network-sandbox binpkg-dostrip pid-sandbox strict"
dev-lang/python-3.10.0_p1::gentoo was built with the following:
USE="bluetooth gdbm ncurses readline sqlite ssl xml -build -examples -hardened -test -tk -verify-sig -wininst" ABI_X86="(64)"
CFLAGS="-pipe -O2 -march=znver1 -fwrapv"
CXXFLAGS="-pipe -O2 -march=znver1 -fwrapv"
FEATURES="userfetch userpriv xattr fakeroot protect-owned unmerge-orphans buildsyspkg parallel-install cgroup distlocks mount-sandbox binpkg-docompress sandbox unmerge-logs ebuild-locks multilib-strict ipc-sandbox qa-unresolved-soname-deps parallel-fetch compressdebug config-protect-if-modified fixlafiles merge-sync assume-digests preserve-libs binpkg-logs news binpkg-multi-instance usersandbox unknown-features-warn usersync sfperms network-sandbox binpkg-dostrip pid-sandbox strict"
Not sure, if this is related to the changes from bug #788886 and if upstream updated the package after the merge. During my tests of said bug, which was before they merged the changes, anything worked with python3.{9,10} installed. I'm not sure, however, if I had py27 installed in my test environment. Their logic selects to lowest available version which satisfies their minimum requirements. Eventually updating their minimum python requirements from 2.7 to some 3.x can solve this. Someone hit this in #gentoo earlier and bizarrely re-emerging Boost fixed it (In reply to Sam James from comment #10) > Someone hit this in #gentoo earlier and bizarrely re-emerging Boost fixed it Disregard; they came back and said they spoke too soon. The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6d3c1357a7c95b95ecdbf31b3c919890efbcd7f0 commit 6d3c1357a7c95b95ecdbf31b3c919890efbcd7f0 Author: Sam James <sam@gentoo.org> AuthorDate: 2021-11-20 07:06:09 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-11-20 07:07:25 +0000 dev-libs/boost: add Python 3.10 patch Been meaning to add this but was undecided given no problems seemed to pop up. Then made the connection (doh) between the linked OpenVDB bug after seeing another distro (Exherbo) pick up this patch. Let's see if it helps the situation there. Bug: https://bugs.gentoo.org/790350 Signed-off-by: Sam James <sam@gentoo.org> ...ost-1.77.0-r2.ebuild => boost-1.77.0-r3.ebuild} | 1 + .../boost/files/boost-1.77.0-python-3.10.patch | 44 ++++++++++++++++++++++ 2 files changed, 45 insertions(+) The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8f69aea9c3a148dcc961957e8004eaa0dc45be8b commit 8f69aea9c3a148dcc961957e8004eaa0dc45be8b Author: Sam James <sam@gentoo.org> AuthorDate: 2021-12-02 02:33:57 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-12-02 02:34:21 +0000 media-gfx/openvdb: tweak Python detection for 9.0.0 Let's try this. We might be able to drop the options we pass in the ebuild entirely, but not wanting to mess too much for a moment. Bug: https://bugs.gentoo.org/790350 Signed-off-by: Sam James <sam@gentoo.org> ...unconditionally-search-Python-interpreter.patch | 40 ++++++++++++++++++++++ media-gfx/openvdb/openvdb-9.0.0.ebuild | 1 + 2 files changed, 41 insertions(+) (In reply to Larry the Git Cow from comment #13) > The bug has been referenced in the following commit(s): > > https://gitweb.gentoo.org/repo/gentoo.git/commit/ > ?id=8f69aea9c3a148dcc961957e8004eaa0dc45be8b > > commit 8f69aea9c3a148dcc961957e8004eaa0dc45be8b > Author: Sam James <sam@gentoo.org> > AuthorDate: 2021-12-02 02:33:57 +0000 > Commit: Sam James <sam@gentoo.org> > CommitDate: 2021-12-02 02:34:21 +0000 > > media-gfx/openvdb: tweak Python detection for 9.0.0 Could this please be backported to media-gfx/openvdb-8.1.0? Because of an incompatibility regarding dev-cpp/tbb-2021 between media-gfx/openvdb-9.0.0 and sci-libs/vtk (any version) I am stuck with that version of media-gfx/openvdb for now. The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1f271a2a1c109baac36ec566b00683f8e1589ae3 commit 1f271a2a1c109baac36ec566b00683f8e1589ae3 Author: Sam James <sam@gentoo.org> AuthorDate: 2021-12-04 01:09:41 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-12-04 01:09:46 +0000 media-gfx/openvdb: add 8.2.0 Trying without setting PYOPENVDB_INSTALL_DIRECTORY as that _seems_ to work and allows us to avoid backporting a non-trivial patch to 8.x. This should fix some Python-related build issues in previous versions of 8.x (which should be fixed already in 9.x). Bug: https://bugs.gentoo.org/790350 Signed-off-by: Sam James <sam@gentoo.org> media-gfx/openvdb/Manifest | 1 + media-gfx/openvdb/openvdb-8.2.0.ebuild | 130 +++++++++++++++++++++++++++++++++ 2 files changed, 131 insertions(+) (In reply to Dennis Schridde from comment #14) I've added 8.2.0 instead as it's just come out. Could you try it? (I've made a change to fix the Python issue hopefully too, similar to what the patch does for 9.x). The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b62193bab0b3de371047ddb0aacce74591cabcb8 commit b62193bab0b3de371047ddb0aacce74591cabcb8 Author: Bernd Waibel <waebbl-gentoo@posteo.net> AuthorDate: 2021-12-04 20:37:39 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-12-04 21:52:42 +0000 media-gfx/openvdb: fix issue if imath and ilmbase are both installed The patch fixes an issue when OPENVDB_BUILD_BINARIES and OPENVDB_BUILD_RENDER are set and both, dev-libs/imath and media-libs/ilmbase are being installed and allows the package to configure properly in this case. Additionally it fixes the installation location of the python module. Bug: https://bugs.gentoo.org/790350 Package-Manager: Portage-3.0.28, Repoman-3.0.3 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Closes: https://github.com/gentoo/gentoo/pull/23185 Signed-off-by: Sam James <sam@gentoo.org> ...lmbase-if-imath-and-ilmbase-are-installed.patch | 37 ++++++++++++++++++++++ ...unconditionally-search-Python-interpreter.patch | 34 ++++++++++++++++++++ ...penvdb-8.2.0.ebuild => openvdb-8.2.0-r1.ebuild} | 24 ++++++++++---- 3 files changed, 88 insertions(+), 7 deletions(-) (In reply to Sam James from comment #16) > (In reply to Dennis Schridde from comment #14) > > I've added 8.2.0 instead as it's just come out. Could you try it? > > (I've made a change to fix the Python issue hopefully too, similar to what > the patch does for 9.x). Thanks! 8.2.0 emerges. :) The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9d065d7d4ab901612eb897b36caa3e0d8a0e7820 commit 9d065d7d4ab901612eb897b36caa3e0d8a0e7820 Author: Sam James <sam@gentoo.org> AuthorDate: 2021-12-10 04:29:46 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-12-10 04:29:46 +0000 media-gfx/openvdb: use upstream patch for Python detection issue Bug: https://bugs.gentoo.org/790350 Bug: https://github.com/AcademySoftwareFoundation/openvdb/pull/1275 Signed-off-by: Sam James <sam@gentoo.org> ...unconditionally-search-Python-interpreter.patch | 57 ++++++++++------------ media-gfx/openvdb/openvdb-9.0.0.ebuild | 1 - 2 files changed, 26 insertions(+), 32 deletions(-) *** Bug 803032 has been marked as a duplicate of this bug. *** |
