Bug 789960 – sys-apps/hwloc-2.3.0 - /.../ld: /.../libmpi.so: undefined reference to MPIR_being_debugged

• Product: Gentoo Linux
• Status: RESOLVED INVALID

[Description Toralf Förster 2021-05-13 12:23:19 UTC]

/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: warning: libhwloc.so.5, needed by /usr/lib64/libopen-rte.so.20, may conflict with libhwloc.so.15
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpi.so: undefined reference to `MPIR_being_debugged'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmpi.so: undefined reference to `orte_data_server_uri'
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:531: netloc_mpi_find_hosts] Error 1
make[2]: Leaving directory '/var/tmp/portage/sys-apps/hwloc-2.3.0/work/hwloc-2.3.0-abi_x86_64.amd64/utils/netloc/mpi'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_systemd-j2-20210510-164102

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.1.0 *
clang version 12.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.0
Python 3.8.10
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.52.1
  [2]   rust-1.52.1 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.292_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Thu May 13 11:05:28 UTC 2021

emerge -qpvO sys-apps/hwloc
[ebuild   R   ] sys-apps/hwloc-2.3.0  USE="X cairo cpuid netloc pci svg xml -cuda -debug -gl -libudev -nvml -static-libs" ABI_X86="(64) -32 (-x32)"

[Comment 1 Toralf Förster 2021-05-13 12:23:20 UTC]

Created attachment 708027 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2021-05-13 12:23:21 UTC]

Created attachment 708030 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2021-05-13 12:23:23 UTC]

Created attachment 708033 [details]
environment

[Comment 4 Toralf Förster 2021-05-13 12:23:24 UTC]

Created attachment 708036 [details]
etc.portage.tar.bz2

[Comment 5 Toralf Förster 2021-05-13 12:23:25 UTC]

Created attachment 708039 [details]
logs.tar.bz2

[Comment 6 Toralf Förster 2021-05-13 12:23:27 UTC]

Created attachment 708042 [details]
sys-apps:hwloc-2.3.0:20210513-114911.log

[Comment 7 Toralf Förster 2021-05-13 12:23:28 UTC]

Created attachment 708045 [details]
temp.tar.bz2

[Comment 8 David Seifert 2022-01-28 23:16:05 UTC]

This seems to result from an ABI conflict (warning: libhwloc.so.5, needed by /usr/lib64/libopen-rte.so.20, may conflict with libhwloc.so.15) which is unrelated to MPI.