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Bug 776964

Summary: dev-lang/perl-5.32.1 - some paths do not respect EPREFIX
Product: Gentoo/Alt Reporter: Martin Mokrejš <mmokrejs>
Component: Prefix SupportAssignee: Gentoo Prefix <prefix>
Status: RESOLVED FIXED    
Severity: normal CC: perl, sam
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---

Description Martin Mokrejš 2021-03-17 19:46:25 UTC
On a brand new prefix installation I see some path reported by perl are not prefixed by $EPREFIX:

$ perl -V
Summary of my perl5 (revision 5 version 32 subversion 1) configuration:
   
  Platform:
    osname=linux
    osvers=3.10.0-1160.15.2.el7.x86_64
    archname=x86_64-linux
    uname='linux ursa.cerit-sc.cz 3.10.0-1160.15.2.el7.x86_64 #1 smp thu jan 21 16:15:07 est 2021 x86_64 intel(r) xeon(r) gold 6254 cpu @ 3.10ghz genuineintel gnulinux '
    config_args='-des -Dinstallprefix=/storage/brno3-cerit/home/mmokrejs/gentoo/usr -Dinstallusrbinperl=n -Ui_xlocale -Di_ndbm -Di_gdbm -Di_db -DDEBUGGING=none -Dlibpth=/storage/brno3-cerit/home/mmokrejs/gentoo/lib64 /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64 /lib/*-linux-gnu /usr/lib/*-linux-gnu /lib64 /lib/64 /usr/lib64 /usr/lib/64 /lib32 /usr/lib32 /lib /usr/lib -Dnoextensions=ODBM_File -Duseshrplib -Darchname=x86_64-linux -Dcc=x86_64-pc-linux-gnu-gcc -Dar=x86_64-pc-linux-gnu-ar -Dnm=x86_64-pc-linux-gnu-nm -Dcpp=x86_64-pc-linux-gnu-gcc -E -Dranlib=x86_64-pc-linux-gnu-ranlib -Doptimize=-O2 -pipe -mtune=native -ftree-vectorize -Dldflags=-Wl,-O1 -Wl,--as-needed -Dprefix=/storage/brno3-cerit/home/mmokrejs/gentoo/usr -Dsiteprefix=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/local -Dvendorprefix=/storage/brno3-cerit/home/mmokrejs/gentoo/usr -Dscriptdir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/bin -Dprivlib=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/5.32 -Darchlib=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/5.32/x86_64-linux -Dsitelib=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/lib64/perl5/5.32 -Dsitearch=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/lib64/perl5/5.32/x86_64-linux -Dvendorlib=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/vendor_perl/5.32 -Dvendorarch=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/vendor_perl/5.32/x86_64-linux -Dman1dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/share/man/man1 -Dman3dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/share/man/man3 -Dsiteman1dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/man/man1 -Dsiteman3dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/man/man3 -Dvendorman1dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/share/man/man1 -Dvendorman3dir=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/share/man/man3 -Dman1ext=1 -Dman3ext=3pm -Dlibperl=libperl.so.5.32.1 -Dlocincpth=/storage/brno3-cerit/home/mmokrejs/gentoo/usr/include  -Dglibpth=/storage/brno3-cerit/home/mmokrejs/gentoo/lib64 /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64  -Duselargefiles -Dd_semctl_semun -Dcf_by=Gentoo -Dmyhostname=localhost -Dperladmin=root@localhost -Ud_csh -Dsh=/storage/brno3-cerit/home/mmokrejs/gentoo/bin/sh -Dtargetsh=/storage/brno3-cerit/home/mmokrejs/gentoo/bin/sh -Uusenm -Ui_xlocale -Di_ndbm -Di_gdbm -Di_db -DDEBUGGING=none -Dlibpth=/storage/brno3-cerit/home/mmokrejs/gentoo/lib64 /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64 /lib/*-linux-gnu /usr/lib/*-linux-gnu /lib64 /lib/64 /usr/lib64 /usr/lib/64 /lib32 /usr/lib32 /lib /usr/lib -Dnoextensions=ODBM_File'
    hint=recommended
    useposix=true
    d_sigaction=define
    useithreads=undef
    usemultiplicity=undef
    use64bitint=define
    use64bitall=define
    uselongdouble=undef
    usemymalloc=n
    default_inc_excludes_dot=define
    bincompat5005=undef
  Compiler:
    cc='x86_64-pc-linux-gnu-gcc'
    ccflags ='-fwrapv -fno-strict-aliasing -pipe -I/storage/brno3-cerit/home/mmokrejs/gentoo/usr/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64'
    optimize='-O2 -pipe -mtune=native -ftree-vectorize'
    cppflags='-fwrapv -fno-strict-aliasing -pipe -I/storage/brno3-cerit/home/mmokrejs/gentoo/usr/include'
    ccversion=''
    gccversion='10.2.0'
    gccosandvers=''
    intsize=4
    longsize=8
    ptrsize=8
    doublesize=8
    byteorder=12345678
    doublekind=3
    d_longlong=define
    longlongsize=8
    d_longdbl=define
    longdblsize=16
    longdblkind=3
    ivtype='long'
    ivsize=8
    nvtype='double'
    nvsize=8
    Off_t='off_t'
    lseeksize=8
    alignbytes=8
    prototype=define
  Linker and Libraries:
    ld='x86_64-pc-linux-gnu-gcc'
    ldflags ='-Wl,-O1 -Wl,--as-needed'
    libpth=/storage/brno3-cerit/home/mmokrejs/gentoo/lib64 /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64 /lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu /lib64 /lib/64 /usr/lib64 /usr/lib/64 /lib32 /usr/lib32 /lib /usr/lib /mnt/storage-brno3-cerit/nfs4/home/mmokrejs/gentoo/usr/x86_64-pc-linux-gnu/gcc-bin/10.2.0/../../../lib/gcc/x86_64-pc-linux-gnu/10.2.0/include-fixed /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib /lib/../lib64 /usr/lib/../lib64
    libs=-lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
    perllibs=-ldl -lm -lcrypt -lutil -lc
    libc=libc-2.17.so
    so=so
    useshrplib=true
    libperl=libperl.so.5.32.1
    gnulibc_version='2.32'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs
    dlext=so
    d_dlsymun=undef
    ccdlflags='-Wl,-E'
    cccdlflags='-fPIC'
    lddlflags='-shared -O2 -pipe -mtune=native -ftree-vectorize -Wl,-O1 -Wl,--as-needed'


Characteristics of this binary (from libperl): 
  Compile-time options:
    HAS_TIMES
    PERLIO_LAYERS
    PERL_COPY_ON_WRITE
    PERL_DONT_CREATE_GVSV
    PERL_MALLOC_WRAP
    PERL_OP_PARENT
    PERL_PRESERVE_IVUV
    USE_64_BIT_ALL
    USE_64_BIT_INT
    USE_LARGE_FILES
    USE_LOCALE
    USE_LOCALE_COLLATE
    USE_LOCALE_CTYPE
    USE_LOCALE_NUMERIC
    USE_LOCALE_TIME
    USE_PERLIO
    USE_PERL_ATOF
  Locally applied patches:
    0001-Fix-hpux-hints.patch
    - Fix hpux hints
    0002-aix-gcc-detection-and-shared-library-soname-support.patch
    - aix gcc detection and shared library soname support
    0003-cpan-ExtUtils-MakeMaker-drop-PORTAGE_TMPDIR-from-LD_.patch
    - cpan/ExtUtils-MakeMaker: drop $PORTAGE_TMPDIR from LD_RUN_PATH
    - Bug: https://bugs.gentoo.org/105054
    0004-Remove-rpath-and-append-LDFLAGS-to-lddlflags.patch
    - Remove -rpath and append LDFLAGS to lddlflags
    0005-Add-headers-for-opensolaris.patch
    - Add headers for opensolaris
    0006-List-packaged-patches-in-patchlevel.h.patch
    - List packaged patches for perl-5.32.1(perl-5.32.0-patches-1) in patchlevel.h
    - Bug: https://bugs.debian.org/567489
    0007-Cleanup-PATH-and-shrpenv.patch
    - Cleanup PATH and shrpenv
    0008-Tweak-enc2xs-to-follow-symlinks-and-ignore-missing-I.patch
    - Tweak enc2xs to follow symlinks and ignore missing @INC directories.
    - Bug: https://bugs.debian.org/290336
    0009-darwin-Use-CC-to-link.patch
    - darwin: Use $CC to link
    - Bug: https://bugs.gentoo.org/297751
    0010-Provide-a-sensible-INSTALLDIRS-default-for-modules-i.patch
    - Provide a sensible INSTALLDIRS default for modules installed from CPAN.
    0011-Fix-interix-hints.patch
    - Fix interix hints
    0012-Set-libperl-soname.patch
    - Set libperl soname
    - Bug: https://bugs.gentoo.org/286840
    0013-Add-etc-perl-to-INC.patch
    - Add /etc/perl to @INC
    0014-cpan-ExtUtils-MakeMaker-remove-targets-that-generate.patch
    - cpan/ExtUtils-MakeMaker: remove targets that generate perllocal.pod
    0015-Don-t-force-fstack-protector-on-everyone.patch
    - Don't force -fstack-protector on everyone
    - Bug: https://bugs.gentoo.org/348557
    0016-Do-not-set-custom-CFLAGS-in-cpan-Digest-SHA.patch
    - Do not set custom CFLAGS in cpan/Digest-SHA
    - Bug: https://bugs.gentoo.org/506818
    0017-Configure-Don-t-include-sources-in-usr-local-for-com.patch
    - Configure: Don't include sources in /usr/local/ for compiling perl
    0018-cpan-IO-Socket-IP-Disable-network-tests.patch
    - cpan/IO-Socket-IP: Disable network tests
    0019-Fix-EUMM-podlocal-tests.patch
    - Fix EUMM podlocal tests
    0020-Skip-auto-linking-nsl-and-cl.patch
    - Skip auto-linking nsl and cl
    - Bug: https://rt.perl.org/Public/Bug/Display.html?id=13148
    0021-Disable-porting-tests-which-create-fun-false-failure.patch
    - Disable porting tests which create fun false-failures all over travis
    0022-Disable-PathTools-tests-which-fails-under-sandboxing.patch
    - Disable PathTools tests which fails under sandboxing
    - Bug: https://bugs.gentoo.org/645084
    0023-Fix-CPAN-FirstTime-defaults-with-nonexisting-site-di.patch
    - Fix CPAN::FirstTime defaults with nonexisting site dirs if a parent is writable
    - Bug: https://bugs.debian.org/688842
    0024-Pass-LD-settings-through-to-subdirectories.patch
    - Pass LD settings through to subdirectories
    - Bug: https://bugs.debian.org/758471
    0025-Memoize-Storable-respect-nstore-option-not-respected.patch
    - Memoize::Storable: respect 'nstore' option not respected
    - Bug: https://bugs.debian.org/587650
    - Bug: https://rt.cpan.org/Public/Bug/Display.html?id=77790
    0026-Better-errors-for-man-pages-from-standard-input.patch
    - Better errors for man pages from standard input
    - Bug: https://bugs.debian.org/777405
    0027-Respect-umask-during-installation.patch
    - Respect umask during installation
    0028-Document-that-CCFLAGS-should-include-Config-ccflags.patch
    - Document that CCFLAGS should include $Config{ccflags}
    - Bug: https://bugs.debian.org/628522
    - Bug: https://rt.cpan.org/Public/Bug/Display.html?id=68613
    0029-Fix-parallel-building.patch
    - Fix parallel building
    0030-Add-support-for-Dgentoolibdirs.patch
    - Add support for -Dgentoolibdirs
  Built under linux
  Compiled at Mar 17 2021 19:40:31
  @INC:
    /etc/perl
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/lib64/perl5/5.32/x86_64-linux
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/local/lib64/perl5/5.32
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/vendor_perl/5.32/x86_64-linux
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/vendor_perl/5.32
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/5.32/x86_64-linux
    /storage/brno3-cerit/home/mmokrejs/gentoo/usr/lib64/perl5/5.32
$


$ emerge --info
Portage 3.0.17 (python 3.8.8-final-0, default/linux/amd64/17.1/no-multilib/prefix/kernel-3.2+, gcc-10.2.0, glibc-2.32-r8, 3.10.0-1160.15.2.el7.x86_64 x86_64)
=================================================================
System uname: Linux-3.10.0-1160.15.2.el7.x86_64-x86_64-Intel-R-_Xeon-R-_Gold_6254_CPU_@_3.10GHz-with-glibc2.2.5
KiB Mem:  10563841808 total, 722431560 free
KiB Swap:    4194300 total,   3895952 free
Timestamp of repository gentoo: Wed, 17 Mar 2021 01:00:01 +0000
Head commit of repository gentoo: 7f45254f083ec6d66c62d554198d449ea52e3420
sh bash 5.1_p4
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-shells/bash:          5.1_p4::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.32.1::gentoo
dev-lang/python:          3.8.8::gentoo, 3.9.2::gentoo
dev-util/cmake:           3.19.7::gentoo
sys-apps/baselayout:      2.7-r1::gentoo
sys-apps/sandbox:         2.21::gentoo
sys-devel/autoconf:       2.71::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.35.2::gentoo
sys-devel/gcc:            9.3.0-r2::gentoo, 10.2.0-r5::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.11::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32-r8::gentoo
Repositories:

gentoo
    location: /mnt/storage-brno3-cerit/nfs4/home/mmokrejs/gentoo/var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: no

science
    location: /mnt/storage-brno3-cerit/nfs4/home/mmokrejs/gentoo/var/lib/layman/science
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE Intel-SDP intel-ucode fasta meme mRNAmarkup ApE modeller gmap abyss swiss-prot Aladdin AVASYS pyvcf Non-profit-OSL-3.0 estscan blat staden CeCILL-1.1 phrap STRIDE cctbx-2.0 bh-luxi ARIADNE unRAR trf freedist free-noncomm genscan no-source-code BSD MIT BSD-2 unicode Subversion"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -mtune=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /storage/brno3-cerit/home/mmokrejs/gentoo/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /storage/brno3-cerit/home/mmokrejs/gentoo/etc/env.d /storage/brno3-cerit/home/mmokrejs/gentoo/etc/gentoo-release"
CXXFLAGS="-O2 -pipe -mtune=native -ftree-vectorize"
DISTDIR="/storage/brno3-cerit/home/mmokrejs/gentoo/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -mtune=native -ftree-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news nostrip parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged"
FFLAGS="-O2 -pipe -mtune=native -ftree-vectorize"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j100"
PKGDIR="/storage/brno3-cerit/home/mmokrejs/gentoo/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/storage/brno3-cerit/home/mmokrejs/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/scratch.ssd/mmokrejs/job_2285717.cerit-pbs.cerit-sc.cz"
USE="acl amd64 asm avx avx2 berkdb boost bzip2 cli crypt dri emboss fortran gdbm gmp iconv icu java jpeg jpg lapack libglvnd libtirpc mariadb mmx ncurses nfs nls nptl nptlonly objc openmp openssl pbs pcre pcre16 pdf perl png prefix readline sctp seccomp server session split-usr sqlite sse sse2 sse3 sse4_1 sse4_2 ssl sslv3 ssse3 svg tcl tcpd threads tiff tk truetype unicode vim-syntax xml zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_8" PYTHON_TARGETS="python3_8" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Fabian Groffen gentoo-dev 2021-03-18 07:02:32 UTC
you're specifically referring to @INC?
Comment 2 Martin Mokrejš 2021-03-18 11:43:14 UTC
Not only @INC, also "libpth=" which could be a real problem on a different ARCH or ABI system.
Comment 3 Martin Mokrejš 2021-03-18 19:30:08 UTC
    0013-Add-etc-perl-to-INC.patch
    - Add /etc/perl to @INC

This should be disabled prefix systems.
Comment 4 Andreas K. Hüttel archtester gentoo-dev 2022-10-02 21:36:46 UTC
Long gone.