Bug 767388 – dev-haskell/aeson-pretty-0.8.8 undefined reference during linking

• Product: Gentoo Linux
• Status: UNCONFIRMED ---

[Description Jiahao_XU 2021-01-27 04:12:20 UTC]

Created attachment 684834 [details]
build log

dev-haskell/aeson-pretty-0.8.8 failed with undefined reference during linking when using gcc with no lto, clang with no lto and clang with lto:

    Preprocessing executable 'aeson-pretty' for aeson-pretty-0.8.8..
    Building executable 'aeson-pretty' for aeson-pretty-0.8.8..
    [1 of 2] Compiling Paths_aeson_pretty ( dist/build/aeson-pretty/autogen/Paths_aeson_pretty.hs, dist/build/aeson-pretty/aeson-pretty-tmp/Paths_aeson_pretty.dyn_o )
    [2 of 2] Compiling Main             ( cli-tool/Main.hs, dist/build/aeson-pretty/aeson-pretty-tmp/Main.dyn_o )
    Linking dist/build/aeson-pretty/aeson-pretty ...
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSaeson-1.4.7.1-IjEUHhY0HKvju0iWmAkzM-ghc8.8.4.so: undefined reference to hashable_fnv_hash_offset [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memmove [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Word [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Word8 [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Word16 [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Word32 [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Word64 [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Float [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Double [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSvector-0.12.1.2-2SdyCISy4Mq9QlUQ0dmQYh-ghc8.8.4.so: undefined reference to hsprimitive_memset_Char [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHSprimitive-0.7.1.0-HzkHTAQqRdSC3uXdUuRRnX-ghc8.8.4.so: undefined reference to hsprimitive_memset_Ptr [--no-allow-shlib-undefined]
    ld.lld: error: /usr/lib64/x86_64-linux-ghc-8.8.4/libHShashable-1.2.7.0-8rZyPp4TU5R2HZlbiRfJ3x-ghc8.8.4.so: undefined reference to hashable_fnv_hash [--no-allow-shlib-undefined]
    collect2: error: ld returned 1 exit status

Output of `emerge --info '=dev-haskell/aeson-pretty-0.8.8::gentoo'`:

    Portage 3.0.13 (python 3.8.7-final-0, default/linux/amd64/17.1/systemd, gcc-9.3.0, glibc-2.32-r5, 5.4.80-gentoo-r1 x86_64)
    =================================================================
                             System Settings
    =================================================================
    System uname: Linux-5.4.80-gentoo-r1-x86_64-Intel-R-_Core-TM-_i7-8750H_CPU_@_2.20GHz-with-glibc2.2.5
    KiB Mem:    16276224 total,  13413164 free
    KiB Swap:     524284 total,    524284 free
    Timestamp of repository gentoo: Mon, 25 Jan 2021 00:45:01 +0000
    Head commit of repository gentoo: 67b16f9e7dc2522a23c378b0a4483af09685435e
    sh bash 5.0_p18
    ld GNU ld (Gentoo 2.34 p6) 2.34.0
    app-shells/bash:          5.0_p18::gentoo
    dev-java/java-config:     2.3.1::gentoo
    dev-lang/perl:            5.30.3::gentoo
    dev-lang/python:          2.7.18-r6::gentoo, 3.8.7-r1::gentoo, 3.9.1-r1::gentoo
    dev-util/cmake:           3.17.4-r1::gentoo
    sys-apps/baselayout:      2.7::gentoo
    sys-apps/sandbox:         2.20::gentoo
    sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
    sys-devel/automake:       1.16.2-r1::gentoo
    sys-devel/binutils:       2.34-r2::gentoo
    sys-devel/gcc:            9.3.0-r2::gentoo
    sys-devel/gcc-config:     2.3.2-r1::gentoo
    sys-devel/libtool:        2.4.6-r6::gentoo
    sys-devel/make:           4.3::gentoo
    sys-kernel/linux-headers: 5.4-r1::gentoo (virtual/os-headers)
    sys-libs/glibc:           2.32-r5::gentoo
    Repositories:
    
    gentoo
        location: /var/db/repos/gentoo
        sync-type: rsync
        sync-uri: rsync://rsync.gentoo.org/gentoo-portage
        priority: -1000
        sync-rsync-extra-opts: 
        sync-rsync-verify-metamanifest: yes
        sync-rsync-verify-max-age: 24
        sync-rsync-verify-jobs: 1
    
    ACCEPT_KEYWORDS="amd64"
    ACCEPT_LICENSE="@FREE"
    CBUILD="x86_64-pc-linux-gnu"
    CC="clang"
    CFLAGS="-march=native -O3 -flto=thin -fmerge-all-constants -fomit-frame-pointer"
    CHOST="x86_64-pc-linux-gnu"
    CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
    CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
    CXX="clang++"
    CXXFLAGS="-march=native -O3 -flto=thin -fmerge-all-constants -fomit-frame-pointer"
    DISTDIR="/var/cache/distfiles"
    ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
    FCFLAGS="-Ofast -march=native -flto"
    FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
    FFLAGS="-Ofast -march=native -flto"
    GENTOO_MIRRORS="http://ftp.swin.edu.au/gentoo"
    LANG="C.UTF8"
    LDFLAGS="-flto=thin -fuse-ld=lld -Wl,--plugin-opt=O3,-O3"
    MAKEOPTS="-j12"
    PKGDIR="/var/cache/binpkgs"
    PORTAGE_CONFIGROOT="/"
    PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
    PORTAGE_TMPDIR="/var/tmp"
    USE="acl adns alsa amd64 bash-completion berkdb bzip2 clang cli crypt dbus dri fortran gdbm iconv ipv6 libglvnd libnotify libtirpc lto multilib ncurses networkmanager nls nptl openmp pam pcre policykit pulseaudio readline seccomp split-usr sqlite ssl systemd tcpd udev unicode wayland xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_8" PYTHON_TARGETS="python2_7 python3_8" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
    Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
    
Output of `emerge -pqv '=dev-haskell/aeson-pretty-0.8.8::gentoo'`:

    [ebuild  N    ] dev-haskell/aeson-pretty-0.8.8  USE="-doc -hscolour -lib-only -profile"

[Comment 1 Sergei Trofimovich (RETIRED) 2021-02-10 18:55:00 UTC]

The bug here is in vector package, which is already underlinked. Did you build it before or after https://gitweb.gentoo.org/repo/gentoo.git/commit/eclass/haskell-cabal.eclass?id=f8153b536170f72d88012a48180e1e32ee92091d applied?

Chances are that rebuilding vector might be enough to get your system back in service.