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Bug 756064

Summary: =sys-libs/libseccomp-2.5.1[python] is missing a dependency on dev-python/cython
Product: Gentoo Linux Reporter: Olivier Huber <oli.huber>
Component: Current packagesAssignee: Gentoo's Team for Core System packages <base-system>
Status: RESOLVED FIXED    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: build.log

Description Olivier Huber 2020-11-22 10:05:57 UTC 
Created attachment 674332 [details]
build.log

From build.log:

 * python3_9: running distutils-r1_run_phase distutils-r1_python_compile
python3.9 setup.py build -j 4
Traceback (most recent call last):
  File "/dev/shm/portage/sys-libs/libseccomp-2.5.1/work/libseccomp-2.5.1/src/python/setup.py", line 28, in <module>
    from Cython.Distutils import build_ext
ModuleNotFoundError: No module named 'Cython'
 * ERROR: sys-libs/libseccomp-2.5.1::gentoo failed (compile phase):



# emerge --info '=sys-libs/libseccomp-2.5.1::gentoo'
Portage 3.0.8 (python 3.7.9-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-9.3.0, glibc-2.32-r3, 5.8.13-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.8.13-gentoo-x86_64-Intel-R-_Core-TM-_i7-8665U_CPU_@_1.90GHz-with-gentoo-2.7
KiB Mem:    32691136 total,   5998500 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 21 Nov 2020 21:30:01 +0000
Head commit of repository gentoo: 35ac0c893a3c15c90100033ed7962f63640b7fb7
Head commit of repository flatpak-overlay: 85b574e89510f6422e0e5177de99f8893eec6608

Head commit of repository kdab-overlay: 7f7d39d40b5d0561c56201e7642796e99d0c99b6

sh bash 5.0_p18
ld GNU ld (Gentoo 2.34 p6) 2.34.0
app-shells/bash:          5.0_p18::gentoo
dev-java/java-config:     2.3.1::gentoo
dev-lang/perl:            5.30.3-r1::gentoo
dev-lang/python:          2.7.18-r4::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.6::gentoo, 3.9.0::gentoo
dev-util/cmake:           3.19.0::gentoo
sys-apps/baselayout:      2.7-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.20::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.34-r2::gentoo, 2.35.1-r1::gentoo
sys-devel/gcc:            9.3.0::gentoo, 10.2.0-r3::gentoo
sys-devel/gcc-config:     2.3.2-r1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.9::gentoo (virtual/os-headers)
sys-libs/glibc:           2.32-r3::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1

flatpak-overlay
    location: /var/db/repos/flatpak
    sync-type: git
    sync-uri: https://github.com/fosero/flatpak-overlay.git
    masters: gentoo
    priority: 50

kdab-overlay
    location: /var/db/repos/kdab
    sync-type: git
    sync-uri: https://github.com/KDAB/kdab-overlay.git
    masters: gentoo
    priority: 50

localrepo
    location: /var/db/repos/localrepo
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -march=native -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=native -pipe"
GENTOO_MIRRORS="https://ftp.fau.de/gentoo"
LANG="en_US.utf-8"
LC_ALL="en_US.utf-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/dev/shm"
USE="X a52 aac acl acpi activities adns alsa amd64 audit bcrypt berkdb blake2 bluetooth bluray boost branding brightness-control brotli bzip2 cacert cairo caps cdda cdr chm cli colord cplugins crypt cscope cups curl dbus declarative dia djvu dri dts dvd dvdr ed25519 egl eglfs elf elogind emboss encode eps epub evdev exif ffmpeg fftw fits flac fontconfig fontforge fortran gdbm gif gles gles2 gmp gold gpm graphviz gsl gtk gui highlight http2 iconv icu idn imagemagick ipv6 jack jpeg jpeg2k json kde kipi kms kwallet lapack lapacke latex lcms libglvnd libnotify libsamplerate libtirpc lm-sensors lz4 lzma mad markdown metis mms mng mobi mp3 mp4 mpeg mtp multilib ncurses nls nptl ogg openexr opengl openmp pam pango pcre pdf perl phonon plasma plugins pm-utils png policykit postscript ppds pthread python qml qt5 quiche raw readline rtmp sasl screencast sctp sdl seccomp semantic-desktop sparse speex spell split-usr sqlite ssh ssl startup-notification svg szip tcpd terminal theora threads thunderbolt tiff tools touchpad truetype udev udisks unicode upower usb utils v4l vaapi vim-syntax vorbis wayland webp widgets x264 xar xattr xcb xml xpm xv xvid xxhash yaml z3 zimg zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="de en fr" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="BPF X86 WebAssembly" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2 php7-3 php7-4" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python3_7 python3_8 python3_9" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Larry the Git Cow gentoo-dev 2020-11-29 20:22:54 UTC 
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=96569e0818e1208f07292f3bbab159747a00903f

commit 96569e0818e1208f07292f3bbab159747a00903f
Author:     Lars Wendler <polynomial-c@gentoo.org>
AuthorDate: 2020-11-29 20:22:40 +0000
Commit:     Lars Wendler <polynomial-c@gentoo.org>
CommitDate: 2020-11-29 20:22:40 +0000

    sys-libs/libseccomp: Added dev-python/cython to BDEPEND
    
    Reported-by: Olivier Huber <oli.huber@gmail.com>
    Closes: https://bugs.gentoo.org/756064
    Package-Manager: Portage-3.0.11, Repoman-3.0.2
    Signed-off-by: Lars Wendler <polynomial-c@gentoo.org>

 sys-libs/libseccomp/libseccomp-2.5.1.ebuild | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)