Bug 755785

Summary:	[science overlay] sci-biology/tagdust-20101028 : fails to build with -fno-common or gcc-10
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-biology
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	705764
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 sci-biology:tagdust-20101028:20201120-054218.log temp.tbz2

Description Toralf Förster gentoo-dev

2020-11-20 15:55:58 UTC

gcc   -O2 -pipe -march=native -fno-diagnostics-color  -c rand.c
gcc   -O2 -pipe -march=native -fno-diagnostics-color  -c test_sequence.c
gcc   -O2 -pipe -march=native -fno-diagnostics-color  -c background.c
gcc   -O2 -pipe -march=native -fno-diagnostics-color  -lpthread input.o interface.o main.o rand.o test_sequence.o background.o -o tagdust
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: interface.o:(.bss+0x0): multiple definition of `linewrap'; input.o:(.bss+0x0): first defined here
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: interface.o:(.bss+0x8): multiple definition of `seed'; input.o:(.bss+0x8): first defined here

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-libressl_science-20201116-220441

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/11
11.0.0
Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.9 (fallback)
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.272_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Fri Nov 20 05:05:35 AM UTC 2020
/var/db/repos/libressl	Sat Nov  7 03:06:11 PM UTC 2020

emerge -qpvO sci-biology/tagdust
[ebuild  N    ] sci-biology/tagdust-20101028

Comment 1 Toralf Förster gentoo-dev

2020-11-20 15:55:59 UTC

Created attachment 673702 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2020-11-20 15:56:01 UTC

Created attachment 673705 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2020-11-20 15:56:02 UTC

Created attachment 673708 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2020-11-20 15:56:03 UTC

Created attachment 673711 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2020-11-20 15:56:04 UTC

Created attachment 673714 [details]
sci-biology:tagdust-20101028:20201120-054218.log

Comment 6 Toralf Förster gentoo-dev

2020-11-20 15:56:05 UTC

Created attachment 673717 [details]
temp.tbz2

Comment 7 Larry the Git Cow gentoo-dev

2021-02-20 23:26:14 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/proj/sci.git/commit/?id=9d417a388180071cd3607dd05447c20ccd789e21

commit 9d417a388180071cd3607dd05447c20ccd789e21
Author:     Jakov Smolic <jakov.smolic@sartura.hr>
AuthorDate: 2021-02-20 20:30:34 +0000
Commit:     Jakov Smolic <jakov.smolic@sartura.hr>
CommitDate: 2021-02-20 21:57:41 +0000

    sci-biology/tagdust: Port to EAPI 7
    
    Closes: https://bugs.gentoo.org/755785
    Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr>

 .../files/tagdust-20101028-fno-common.patch        | 77 ++++++++++++++++++++++
 sci-biology/tagdust/tagdust-20101028.ebuild        | 17 +++--
 2 files changed, 85 insertions(+), 9 deletions(-)