| Summary: | [science overlay] sci-biology/rnaplex-0.2 : fails to build with -fno-common or gcc-10 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | sci-biology |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 705764 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:rnaplex-0.2:20201120-032223.log temp.tbz2 |
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Created attachment 673612 [details]
emerge-info.txt
Created attachment 673615 [details]
emerge-history.txt
Created attachment 673618 [details]
environment
Created attachment 673621 [details]
etc.portage.tbz2
Created attachment 673624 [details]
logs.tbz2
Created attachment 673627 [details]
sci-biology:rnaplex-0.2:20201120-032223.log
Created attachment 673630 [details]
temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/proj/sci.git/commit/?id=2b0744a231b93f5e09b63375005fb6e522999c9a commit 2b0744a231b93f5e09b63375005fb6e522999c9a Author: Jakov Smolic <jakov.smolic@sartura.hr> AuthorDate: 2021-02-20 20:21:18 +0000 Commit: Jakov Smolic <jakov.smolic@sartura.hr> CommitDate: 2021-02-20 21:57:41 +0000 sci-biology/rnaplex: Port to EAPI 7 Closes: https://bugs.gentoo.org/755770 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> sci-biology/rnaplex/files/rnaplex-0.2-inline.patch | 14 ++++++++++++++ sci-biology/rnaplex/rnaplex-0.2.ebuild | 17 ++++++++++++----- 2 files changed, 26 insertions(+), 5 deletions(-) |
RNAplex.c:1412:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1412 | fread(access[count],sizeof(int),(end-beg)+1,fp); //read the needed number of accessibility values | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o RNAplex RNAplex.o ../lib/libRNAplex.a -lm /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/libRNAplex.a(libRNAplex_a-subopt.o):(.bss+0x0): multiple definition of `FcM'; ../lib/libRNAplex.a(libRNAplex_a-fold.o):(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: ../lib/libRNAplex.a(libRNAplex_a-subopt.o):(.bss+0x4): multiple definition of `FcI'; ../lib/libRNAplex.a(libRNAplex_a-fold.o):(.bss+0x4): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-libressl_science-20201116-220441 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.2.0 * /usr/lib/llvm/11 11.0.0 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python2.7 (fallback) The following VMs are available for generation-2: *) AdoptOpenJDK 8.272_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.8.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Fri Nov 20 02:35:36 AM UTC 2020 /var/db/repos/libressl Sat Nov 7 03:06:11 PM UTC 2020 emerge -qpvO sci-biology/rnaplex [ebuild N ] sci-biology/rnaplex-0.2