Bug 755746 – [science overlay] sci-biology/dcm2niix-1.0.20200331 : -- Could NOT find Git (missing: GIT_EXECUTABLE)

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2020-11-20 15:53:16 UTC]

-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
CMake Error at SuperBuild/SuperBuild.cmake:4 (message):
  Cannot find Git.  Git is required for Superbuild
Call Stack (most recent call first):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-libressl_science-20201116-220441

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
/usr/lib/llvm/11
11.0.0
Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.9 (fallback)
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.272_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Fri Nov 20 04:05:36 AM UTC 2020
/var/db/repos/libressl	Sat Nov  7 03:06:11 PM UTC 2020

emerge -qpvO sci-biology/dcm2niix
[ebuild  N    ] sci-biology/dcm2niix-1.0.20200331

[Comment 1 Toralf Förster 2020-11-20 15:53:17 UTC]

Created attachment 673495 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2020-11-20 15:53:19 UTC]

Created attachment 673498 [details]
CMakeOutput.log

[Comment 3 Toralf Förster 2020-11-20 15:53:20 UTC]

Created attachment 673501 [details]
emerge-history.txt

[Comment 4 Toralf Förster 2020-11-20 15:53:22 UTC]

Created attachment 673504 [details]
environment

[Comment 5 Toralf Förster 2020-11-20 15:53:23 UTC]

Created attachment 673507 [details]
etc.portage.tbz2

[Comment 6 Toralf Förster 2020-11-20 15:53:24 UTC]

Created attachment 673510 [details]
logs.tbz2

[Comment 7 Toralf Förster 2020-11-20 15:53:27 UTC]

Created attachment 673513 [details]
sci-biology:dcm2niix-1.0.20200331:20201120-045331.log

[Comment 8 Toralf Förster 2020-11-20 15:53:28 UTC]

Created attachment 673516 [details]
temp.tbz2

[Comment 9 Larry the Git Cow 2021-06-11 10:13:20 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/proj/sci.git/commit/?id=877cafa591695d148ce3a915043b005d320ce1bf

commit 877cafa591695d148ce3a915043b005d320ce1bf
Author:     Lucas Mitrak <[e-mail]>
AuthorDate: 2021-06-10 21:11:21 +0000
Commit:     Andrew Ammerlaan <[e-mail]>
CommitDate: 2021-06-11 10:13:18 +0000

    sci-biology/dcm2niix: add patch
    
    * Disable finding git in cmake
    * Add patch to ebuild
    
    Currently, sci-biology/dcm2niix will not compile if git is not found.
    The patch dcm2niix-disable_find_git.patch comments out the lines which
    attempt to find git and require it to be found. With this patch, the
    package will compile correctly. Without this patch, cmake will throw
    an error if git is not found.
    This commit was tested in a docker image with dev-util/ebuildtester.
    This commit was written, tested, and submitted by Lucas Mitrak.
    
    Closes: https://bugs.gentoo.org/755746
    Signed-off-by: Lucas Mitrak <[e-mail]>
    Closes: https://github.com/gentoo/sci/pull/1091
    Signed-off-by: Andrew Ammerlaan <[e-mail]>

 sci-biology/dcm2niix/dcm2niix-1.0.20201102.ebuild     |  4 ++++
 .../dcm2niix/files/dcm2niix-disable_find_git.patch    | 19 +++++++++++++++++++
 2 files changed, 23 insertions(+)