Bug 741152

Summary:	sci-biology/STAR-2.5.3a fails to compile: sortSuffixesBucket.cpp:27:40: error: arithmetic on a pointer to void
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	408963
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2020-09-08 09:34:42 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/STAR-2.5.3a fails to compile.
Discovered on: amd64 (internal ref: tinderbox)

NOTE:
This machine uses a clang/LLVM toolchain.
If you think that this issue is strictly related to clang/LLVM please block bug 408963. If you think that this issue is strictly related to the LLD linker, please block bug 731004.
This machine uses also GLIBC-2.32. If you think that this issue is strictly related to GLIBC please block bug 736174.

Comment 1 Agostino Sarubbo gentoo-dev

2020-09-08 09:34:44 UTC

Created attachment 659126 [details]
build.log

build log and emerge --info

Comment 2 Larry the Git Cow gentoo-dev

2022-02-19 11:43:50 UTC

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3596083589625a3c954deccfdfb899b49a53a131

commit 3596083589625a3c954deccfdfb899b49a53a131
Author:     Andrew Ammerlaan <andrewammerlaan@gentoo.org>
AuthorDate: 2022-02-19 11:43:23 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan@gentoo.org>
CommitDate: 2022-02-19 11:43:23 +0000

    sci-biology/STAR: add version 2.7.10a
    
    Closes: https://bugs.gentoo.org/696714
    Bug: https://bugs.gentoo.org/741152
    Bug: https://bugs.gentoo.org/736056
    Bug: https://bugs.gentoo.org/716300
    Package-Manager: Portage-3.0.30, Repoman-3.0.3
    Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

 sci-biology/STAR/Manifest            |  1 +
 sci-biology/STAR/STAR-2.7.10a.ebuild | 41 ++++++++++++++++++++++++++++++++++++
 2 files changed, 42 insertions(+)

Comment 3 Larry the Git Cow gentoo-dev

2022-05-07 11:01:13 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bcd5ba73fe296ee35a11a3ee96a62a35afa4ac0a

commit bcd5ba73fe296ee35a11a3ee96a62a35afa4ac0a
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2022-05-07 11:01:01 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2022-05-07 11:01:01 +0000

    sci-biology/STAR: drop 2.5.3a
    
    Closes: https://bugs.gentoo.org/716300
    Closes: https://bugs.gentoo.org/736056
    Closes: https://bugs.gentoo.org/741152
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/STAR/Manifest                          |   1 -
 sci-biology/STAR/STAR-2.5.3a.ebuild                |  42 -------
 .../STAR/files/STAR-2.5.3a-fix-build-system.patch  | 123 ---------------------
 3 files changed, 166 deletions(-)