Bug 731744

Summary:	sci-biology/blat-34-r2 does not respect CFLAGS
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	59506
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2020-07-08 15:16:03 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/blat does not respect CFLAGS.
Discovered on: amd64  (internal ref: tinderbox)

NOTE:
To reproduce this issue you may want to add "-frecord-gcc-switches" to CFLAGS/CXXFLAGS/FFLAGS/FCFLAGS. If this is not something about c/c++ context see this bug as an hint to hide the QA warning (with QA_FLAGS_IGNORED) where is not possible to respect CFLAGS.

Comment 1 Agostino Sarubbo gentoo-dev

2020-07-08 15:16:09 UTC

Created attachment 648384 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2022-01-19 08:02:58 UTC

tinderbox has reproduced this issue with version 34-r2 - Updating summary.

Comment 3 Larry the Git Cow gentoo-dev

2022-07-07 19:58:06 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=047c13024df906142571f092249bd6f181c13b07

commit 047c13024df906142571f092249bd6f181c13b07
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2022-07-07 19:56:45 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2022-07-07 19:56:45 +0000

    sci-biology/blat: update EAPI 6 -> 8
    
    Closes: https://bugs.gentoo.org/730780
    Closes: https://bugs.gentoo.org/730782
    Closes: https://bugs.gentoo.org/731744
    Signed-off-by: David Seifert <soap@gentoo.org>

 .../blat/{blat-34-r2.ebuild => blat-34-r3.ebuild}  |  13 +-
 .../blat/files/blat-34-fix-build-system.patch      | 195 ++++++++++++++++++---
 2 files changed, 173 insertions(+), 35 deletions(-)