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Bug 718472

Summary: sci-biology/pysam: need py3.7, 3.8 port
Product: Gentoo Linux Reporter: Michał Górny <mgorny>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED FIXED    
Severity: normal Keywords: PullRequest
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
See Also: https://github.com/gentoo/gentoo/pull/16982
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 695996    

Description Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2020-04-19 20:07:16 UTC
The packages are stuck on py3.6 which means they will be pain once we switch to 3.7.  Please test them on 3.7 *and* 3.8 (so we don't to revisit this in a few months), and update PYTHON_COMPAT appropriately.  If it doesn't work, please either fix it, remove Python or issue last rites.  Please consider this urgent.
Comment 1 Larry the Git Cow gentoo-dev 2020-08-03 16:55:53 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=98949b9dddb793b4f2834beb4888df6204322699

commit 98949b9dddb793b4f2834beb4888df6204322699
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-08-03 16:54:29 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-08-03 16:54:29 +0000

    sci-biology/pysam: Bump to 0.16.0.1
    
    Bug: https://bugs.gentoo.org/645060
    Bug: https://bugs.gentoo.org/646986
    Bug: https://bugs.gentoo.org/718472
    Package-Manager: Portage-3.0.1, Repoman-2.3.23
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 +
 .../pysam/files/pysam-0.16.0.1-fix-tests.patch     | 37 +++++++++++++
 sci-biology/pysam/pysam-0.16.0.1.ebuild            | 60 ++++++++++++++++++++++
 3 files changed, 98 insertions(+)
Comment 2 Larry the Git Cow gentoo-dev 2020-08-03 21:11:39 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ebcdc8895b15d89af6600d8241e5cda417a4f7e3

commit ebcdc8895b15d89af6600d8241e5cda417a4f7e3
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-08-03 21:11:13 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-08-03 21:11:13 +0000

    sci-biology/pysam: Remove old
    
    Closes: https://bugs.gentoo.org/645060
    Closes: https://bugs.gentoo.org/646986
    Closes: https://bugs.gentoo.org/718472
    Package-Manager: Portage-3.0.1, Repoman-2.3.23
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 -
 .../pysam/files/pysam-0.12-fix-buildsystem.patch   | 63 ----------------------
 sci-biology/pysam/pysam-0.12.0.1.ebuild            | 47 ----------------
 3 files changed, 111 deletions(-)