| Summary: | sci-biology/STAR-2.5.3a : SharedMemory.h: error: expected ) before key | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo musl team <musl> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | mmokrejs, proxy-maint, sci-biology |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 sci-biology:STAR-2.5.3a:20200405-103850.log temp.tbz2 |
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Created attachment 630396 [details]
emerge-info.txt
Created attachment 630398 [details]
emerge-history.txt
Created attachment 630400 [details]
environment
Created attachment 630402 [details]
etc.portage.tbz2
Created attachment 630404 [details]
sci-biology:STAR-2.5.3a:20200405-103850.log
Created attachment 630406 [details]
temp.tbz2
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3596083589625a3c954deccfdfb899b49a53a131 commit 3596083589625a3c954deccfdfb899b49a53a131 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> AuthorDate: 2022-02-19 11:43:23 +0000 Commit: Andrew Ammerlaan <andrewammerlaan@gentoo.org> CommitDate: 2022-02-19 11:43:23 +0000 sci-biology/STAR: add version 2.7.10a Closes: https://bugs.gentoo.org/696714 Bug: https://bugs.gentoo.org/741152 Bug: https://bugs.gentoo.org/736056 Bug: https://bugs.gentoo.org/716300 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> sci-biology/STAR/Manifest | 1 + sci-biology/STAR/STAR-2.7.10a.ebuild | 41 ++++++++++++++++++++++++++++++++++++ 2 files changed, 42 insertions(+) The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bcd5ba73fe296ee35a11a3ee96a62a35afa4ac0a commit bcd5ba73fe296ee35a11a3ee96a62a35afa4ac0a Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-05-07 11:01:01 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-05-07 11:01:01 +0000 sci-biology/STAR: drop 2.5.3a Closes: https://bugs.gentoo.org/716300 Closes: https://bugs.gentoo.org/736056 Closes: https://bugs.gentoo.org/741152 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/STAR/Manifest | 1 - sci-biology/STAR/STAR-2.5.3a.ebuild | 42 ------- .../STAR/files/STAR-2.5.3a-fix-build-system.patch | 123 --------------------- 3 files changed, 166 deletions(-) |
x86_64-gentoo-linux-musl-g++ -c -O2 -pipe -march=native -Wall -Wextra -pthread x86_64-gentoo-linux-musl-pkg-config --cflags htslib x86_64-gentoo-linux-musl-pkg-config --cflags zlib -std=c++11 -fopenmp -DCOMPILATION_TIME_PLACE=Sun Apr 5 12:38:59 CEST 2020 :/var/tmp/portage/sci-biology/STAR-2.5.3a/work/STAR-2.5.3a/source SharedMemory.cpp In file included from SharedMemory.cpp:5: SharedMemory.h:142:27: error: expected ) before key 142 | SharedMemory(key_t key, bool unloadLast); | ~ ^~~~ | ) ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl-20200328-141627 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-gentoo-linux-musl-9.3.0 * clang version 10.0.0 Target: x86_64-gentoo-linux-musl Thread model: posix InstalledDir: /usr/lib/llvm/10/bin /usr/lib/llvm/10 10.0.0 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.42.0 * The following VMs are available for generation-2: Available Java Virtual Machines: (none found) timestamp of HEAD at this tinderbox image: /var/db/repos/gentoo Sun Apr 5 09:39:16 UTC 2020 /var/db/repos/musl Sat Apr 4 03:02:24 UTC 2020 emerge -qpvO sci-biology/STAR [ebuild N ] sci-biology/STAR-2.5.3a