Bug 716208

Summary:	sci-chemistry/openbabel-perl-2.4.1 : -- Configuring incomplete, errors occurred!
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo musl team <musl>
Status:	RESOLVED FIXED
Severity:	normal	CC:	atoth, sci-chemistry
Priority:	Normal	Keywords:	PullRequest
Version:	unspecified
Hardware:	All
OS:	Linux
See Also:	https://bugs.gentoo.org/show_bug.cgi?id=664124 https://github.com/gentoo/gentoo/pull/16182
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt CMakeError.log CMakeOutput.log emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log temp.tbz2

Description Toralf Förster gentoo-dev

2020-04-04 17:32:02 UTC

Shared          -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0

-- Configuring incomplete, errors occurred!
See also /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeOutput.log.
See also /var/tmp/portage/sci-chemistry/openbabel-perl-2.4.1/work/openbabel-perl-2.4.1_build/CMakeFiles/CMakeError.log.
 * ERROR: sci-chemistry/openbabel-perl-2.4.1::gentoo failed (configure phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl_hardened-20200328-201618

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *
Available Java Virtual Machines:
  (none found)


timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Sat Apr  4 16:39:40 UTC 2020
/var/db/repos/musl	Sat Apr  4 03:02:24 UTC 2020

emerge -qpvO sci-chemistry/openbabel-perl
[ebuild  N    ] sci-chemistry/openbabel-perl-2.4.1

Comment 1 Toralf Förster gentoo-dev

2020-04-04 17:32:05 UTC

Created attachment 630034 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2020-04-04 17:32:07 UTC

Created attachment 630036 [details]
CMakeError.log

Comment 3 Toralf Förster gentoo-dev

2020-04-04 17:32:10 UTC

Created attachment 630038 [details]
CMakeOutput.log

Comment 4 Toralf Förster gentoo-dev

2020-04-04 17:32:13 UTC

Created attachment 630040 [details]
emerge-history.txt

Comment 5 Toralf Förster gentoo-dev

2020-04-04 17:32:16 UTC

Created attachment 630042 [details]
environment

Comment 6 Toralf Förster gentoo-dev

2020-04-04 17:32:19 UTC

Created attachment 630044 [details]
etc.portage.tbz2

Comment 7 Toralf Förster gentoo-dev

2020-04-04 17:32:22 UTC

Created attachment 630046 [details]
logs.tbz2

Comment 8 Toralf Förster gentoo-dev

2020-04-04 17:32:24 UTC

Created attachment 630048 [details]
sci-chemistry:openbabel-perl-2.4.1:20200404-171528.log

Comment 9 Toralf Förster gentoo-dev

2020-04-04 17:32:27 UTC

Created attachment 630050 [details]
temp.tbz2

Comment 10 Attila Tóth 2020-06-03 16:45:46 UTC

CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH):
  MATH cannot parse the expression: "x86_649*10000 + x86_643*100 + x86_640":
  syntax error, unexpected exp_NUMBER, expecting $end (8).
Call Stack (most recent call first):
  cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION)
  CMakeLists.txt:248 (macro_ensure_version)

This is because GCC version autodetection fails again, this time with gcc-10.
Related to this bug:
https://bugs.gentoo.org/664124

Comment 11 Toralf Förster gentoo-dev

2021-04-06 20:31:42 UTC


*** This bug has been marked as a duplicate of bug 664124 ***

Comment 12 Larry the Git Cow gentoo-dev

2021-12-15 10:09:08 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1fce6e91e642ac7fe5c3b9f675c54244be423a53

commit 1fce6e91e642ac7fe5c3b9f675c54244be423a53
Author:     Peter Levine <plevine457@gmail.com>
AuthorDate: 2021-03-22 05:00:23 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan@gentoo.org>
CommitDate: 2021-12-15 10:09:01 +0000

    sci-chemistry/openbabel: Bump openbabel-3.1.1_p20210225
    
    Closes: https://bugs.gentoo.org/664124
    Closes: https://bugs.gentoo.org/716208
    Closes: https://bugs.gentoo.org/722860
    Closes: https://bugs.gentoo.org/723434
    Closes: https://bugs.gentoo.org/766003
    Closes: https://bugs.gentoo.org/770493
    
    Package-Manager: Portage-3.0.17, Repoman-3.0.2
    Signed-off-by: Peter Levine <plevine457@gmail.com>
    Closes: https://github.com/gentoo/gentoo/pull/16182
    Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

 sci-chemistry/openbabel/Manifest                   |   1 +
 .../openbabel/openbabel-3.1.1_p20210225.ebuild     | 272 +++++++++++++++++++++
 2 files changed, 273 insertions(+)