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Bug 716078

Summary: sci-biology/ucsc-genome-browser-260-r1 : fof.c: error: arithmetic on pointer to an incomplete type
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo musl team <musl>
Status: CONFIRMED ---    
Severity: normal CC: sci-biology
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: emerge-info.txt
emerge-history.txt
environment
etc.portage.tbz2
logs.tbz2
sci-biology:ucsc-genome-browser-260-r1:20200403-195829.log
temp.tbz2

Description Toralf Förster gentoo-dev 2020-04-03 20:46:49 UTC
x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o fof.o -c fof.c
fof.c: In function cmpOnFilePos:
fof.c:338:16: error: arithmetic on pointer to an incomplete type
  338 | int dif = a->f - b->f;
      |                ^
fof.c: In function fofMake:

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl_hardened-20200328-201618

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.3.0 *
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.42.0 *

timestamp of HEAD at this tinderbox image:
/var/db/repos/gentoo	Fri Apr  3 18:12:30 UTC 2020
/var/db/repos/musl	Thu Apr  2 19:02:24 UTC 2020

emerge -qpvO sci-biology/ucsc-genome-browser
[ebuild  N    ] sci-biology/ucsc-genome-browser-260-r1  USE="mysql server -static-libs -vhosts"
Comment 1 Toralf Förster gentoo-dev 2020-04-03 20:46:52 UTC
Created attachment 629540 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-04-03 20:46:55 UTC
Created attachment 629542 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-04-03 20:46:58 UTC
Created attachment 629544 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-04-03 20:47:01 UTC
Created attachment 629546 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-04-03 20:47:04 UTC
Created attachment 629548 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-04-03 20:47:07 UTC
Created attachment 629550 [details]
sci-biology:ucsc-genome-browser-260-r1:20200403-195829.log
Comment 7 Toralf Förster gentoo-dev 2020-04-03 20:47:11 UTC
Created attachment 629552 [details]
temp.tbz2