| Summary: | sci-biology/abyss-2.3.4 : Uncompress.cpp: error: redefinition of FILE* fopen(const char*, const char*) | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo musl team <musl> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | CC: | sci-biology |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:abyss-2.0.3:20200401-070520.log temp.tbz2 emerge-info.txt emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-biology:abyss-2.3.4:20220113-131801.log temp.tar.bz2 |
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Created attachment 628350 [details]
emerge-info.txt
Created attachment 628352 [details]
emerge-history.txt
Created attachment 628354 [details]
environment
Created attachment 628356 [details]
etc.portage.tbz2
Created attachment 628358 [details]
logs.tbz2
Created attachment 628360 [details]
sci-biology:abyss-2.0.3:20200401-070520.log
Created attachment 628362 [details]
temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=89ab6a3d9d32bcb93e27580298094a875a530685 commit 89ab6a3d9d32bcb93e27580298094a875a530685 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> AuthorDate: 2022-01-13 11:20:26 +0000 Commit: Andrew Ammerlaan <andrewammerlaan@gentoo.org> CommitDate: 2022-01-13 11:21:37 +0000 sci-biology/abyss: drop version 2.0.3 Closes: https://bugs.gentoo.org/741154 Closes: https://bugs.gentoo.org/715718 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> sci-biology/abyss/Manifest | 1 - sci-biology/abyss/abyss-2.0.3-r2.ebuild | 64 ----------------------- sci-biology/abyss/files/abyss-2.0.3-prog-AR.patch | 11 ---- 3 files changed, 76 deletions(-) appeared recently at the tinderbox image 17.0_musl-j4-20220111-220013 Created attachment 762083 [details]
emerge-info.txt
Created attachment 762084 [details]
emerge-history.txt
Created attachment 762085 [details]
environment
Created attachment 762086 [details]
etc.portage.tar.bz2
Created attachment 762087 [details]
logs.tar.bz2
Created attachment 762088 [details]
sci-biology:abyss-2.3.4:20220113-131801.log
Created attachment 762089 [details]
temp.tar.bz2
tinderbox_musl has reproduced this issue with version 2.3.4 - Updating summary. |
from Uncompress.cpp:15: Uncompress.cpp: At global scope: Uncompress.cpp:157:7: error: redefinition of FILE* fopen(const char*, const char*) 157 | FILE *fopen64(const char *path, const char *mode) | ^~~~~~~ Uncompress.cpp:130:7: note: FILE* fopen(const char*, const char*) previously defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl_hardened-20200328-201618 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-gentoo-linux-musl-9.3.0 * clang version 10.0.0 Target: x86_64-gentoo-linux-musl Thread model: posix InstalledDir: /usr/lib/llvm/10/bin /usr/lib/llvm/10 10.0.0 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.42.0 * timestamp of HEAD at this tinderbox image: /var/db/repos/gentoo Wed Apr 1 05:37:39 UTC 2020 /var/db/repos/musl Fri Mar 27 00:25:27 UTC 2020 emerge -qpvO sci-biology/abyss [ebuild N ] sci-biology/abyss-2.0.3 USE="mpi openmp -misc-haskell"