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Bug 713816

Summary: dev-perl/Bio-DB-HTS does not respect LDFLAGS
Product: Gentoo Linux Reporter: Agostino Sarubbo <ago>
Component: Current packagesAssignee: Marek Szuba <marecki>
Severity: normal CC: esigra, sam, sci-biology
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 331933    
Attachments: build.log

Description Agostino Sarubbo gentoo-dev 2020-03-21 16:28:17 UTC
This is an auto-filled bug because dev-perl/Bio-DB-HTS does not respect LDFLAGS. Attached build log and emerge --info
Comment 1 Agostino Sarubbo gentoo-dev 2020-03-21 16:28:24 UTC
Created attachment 623926 [details]

build log
Comment 2 Agostino Sarubbo gentoo-dev 2020-03-21 16:33:51 UTC
 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/Faidx/
 * /usr/lib/perl5/vendor_perl/5.30.1/i686-linux/auto/Bio/DB/HTS/
Comment 3 Larry the Git Cow gentoo-dev 2020-03-24 22:07:53 UTC
The bug has been closed via the following commit(s):

commit 9e4c8752a1e910bd8fc65e500672de0019b2cffd
Author:     Marek Szuba <>
AuthorDate: 2020-03-24 22:06:38 +0000
Commit:     Marek Szuba <>
CommitDate: 2020-03-24 22:07:43 +0000

    dev-perl/Bio-DB-HTS: respect LDFLAGS
    Package-Manager: Portage-2.3.89, Repoman-2.3.20
    Signed-off-by: Marek Szuba <>

 dev-perl/Bio-DB-HTS/Bio-DB-HTS-2.110.0.ebuild      |  3 ++-
 dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0.ebuild       |  1 +
 .../Bio-DB-HTS/files/2.11-build_env_ldflags.patch  | 22 ++++++++++++++++++++++
 3 files changed, 25 insertions(+), 1 deletion(-)