Summary: | sci-mathematics/pymc3-3.8 version bump | ||
---|---|---|---|
Product: | Gentoo Linux | Reporter: | Erik Quaeghebeur <gentoo> |
Component: | Current packages | Assignee: | Gentoo Science Mathematics related packages <sci-mathematics> |
Status: | RESOLVED OBSOLETE | ||
Severity: | normal | CC: | gentoo, jstein, nehterion, sci |
Priority: | Normal | Keywords: | PMASKED |
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
URL: | https://github.com/pymc-devs/pymc3/releases | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Deadline: | 2020-09-21 |
Description
Erik Quaeghebeur
2020-03-13 14:45:13 UTC
It also requires arviz, which isn't currently packaged (we need also another ebuild). I checked dependencies. DEPEND="
>=dev-python/arviz-0.4.1[${PYTHON_USEDEP}]
>=dev-python/theano-1.0.4[${PYTHON_USEDEP}]
>=dev-python/numpy-1.13[${PYTHON_USEDEP}]
>=dev-python/scipy-0.18.1[${PYTHON_USEDEP}]
>=dev-python/pandas-0.18[${PYTHON_USEDEP}]
>=dev-python/patsy-0.4[${PYTHON_USEDEP}]
>=dev-python/tqdm-4.8.4[${PYTHON_USEDEP}]
>=dev-python/h5py-2.7[${PYTHON_USEDEP}]
"
RDEPEND="${DEPEND}
test? (
>=dev-python/bokeh-0.12.13[${PYTHON_USEDEP}]
>=media-gfx/graphviz-0.8.3[${PYTHON_USEDEP}]
dev-python/ipython[${PYTHON_USEDEP}]
>=dev-python/Keras-2.0.8[${PYTHON_USEDEP}]
>=dev-python/numpydoc-0.9.1[${PYTHON_USEDEP}]
>=dev-python/pycodestyle-2.3.1[${PYTHON_USEDEP}]
>=dev-python/pyflakes-1.5.0[${PYTHON_USEDEP}]
>=dev-python/pylint-1.7.4[${PYTHON_USEDEP}]
>=dev-python/pytest-cov-2.5.1[${PYTHON_USEDEP}]
>=dev-python/pytest-3.0.7[${PYTHON_USEDEP}]
>=dev-python/recommonmark-0.4.0[${PYTHON_USEDEP}]
>=dev-python/seaborn-0.8.1[${PYTHON_USEDEP}]
=dev-python/sphinx-autobuild-0.7.1[${PYTHON_USEDEP}]
>=dev-python/sphinx-1.5.5[${PYTHON_USEDEP}]
)
"
Missing deps in Portage tree:
dev-python/arviz
For test IUSE:
>=dev-python/bokeh-0.12.13
dev-python/Keras
dev-python/sphinx-autobuild
Also these are missing from RDEPEND: test? ( >=dev-python/nbsphinx-0.4.2[${PYTHON_USEDEP}] >=dev-python/nose-1.3.7[${PYTHON_USEDEP}] =dev-python/nose-parameterized-0.6.0[${PYTHON_USEDEP}] ) nbsphinx-0.4.2 and nose-parameterized-0.6.0 are also missing from Portage. As a workaround, I've created an ebuild for 3.1 that excludes the (re)commonmark deps. It's available in my overlay (equaeghe): https://github.com/equaeghe/gentoo-overlay/tree/master/sci-mathematics/pymc3 package(s) removed. |