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Bug 711302

Summary: dev-lang/ruby-2.6.6-r2[jemalloc] fails to build: "<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")"
Product: Gentoo Linux Reporter: Paolo Pedroni <paolo.pedroni>
Component: Current packagesAssignee: Gentoo Ruby Team <ruby>
Status: RESOLVED WONTFIX    
Severity: normal CC: jstein, sandino
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: ruby-2.5.7:20200302-104740.log.gz

Description Paolo Pedroni 2020-03-02 10:59:38 UTC 
Created attachment 616770 [details]
ruby-2.5.7:20200302-104740.log.gz

x86_64-pc-linux-gnu-gcc -O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6 -fno-lto -fno-strict-aliasing -fPIC  -L. -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,--sort-common -flto=6 -fno-lto -fstack-protector -rdynamic -Wl,-export-dynamic -Wl,--no-undefined -fstack-protector -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,--sort-common -flto=6 -fno-lto main.o dmydln.o miniinit.o dmyext.o miniprelude.o array.o bignum.o class.o compar.o compile.o complex.o cont.o debug.o debug_counter.o dir.o dln_find.o encoding.o enum.o enumerator.o error.o eval.o file.o gc.o hash.o inits.o io.o iseq.o load.o marshal.o math.o node.o numeric.o object.o pack.o parse.o proc.o process.o random.o range.o rational.o re.o regcomp.o regenc.o regerror.o regexec.o regparse.o regsyntax.o ruby.o safe.o signal.o sprintf.o st.o strftime.o string.o struct.o symbol.o thread.o time.o transcode.o util.o variable.o version.o vm.o vm_backtrace.o vm_dump.o vm_trace.o probes.o enc/ascii.o enc/us_ascii.o enc/unicode.o enc/utf_8.o enc/trans/newline.o setproctitle.o strlcat.o strlcpy.o addr2line.o   -lpthread -ljemalloc -lgmp -ldl -lcrypt -lm   -o miniruby
:
./miniruby -I./lib -I. -I.ext/common  -n \
-e 'BEGIN{version=ARGV.shift;mis=ARGV.dup}' \
-e 'END{abort "UNICODE version mismatch: #{mis}" unless mis.empty?}' \
-e '(mis.delete(ARGF.path); ARGF.close) if /ONIG_UNICODE_VERSION_STRING +"#{Regexp.quote(version)}"/o' \
10.0.0 ./enc/unicode/10.0.0/casefold.h ./enc/unicode/10.0.0/name2ctype.h 
./miniruby -I./lib -I. -I.ext/common  ./tool/generic_erb.rb -c -o encdb.h ./template/encdb.h.tmpl ./enc enc
<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")
<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")
make: *** [uncommon.mk:711: .rbconfig.time] Aborted (core dumped)
make: *** Waiting for unfinished jobs....
make: *** [uncommon.mk:943: encdb.h] Aborted (core dumped)
 * ERROR: dev-lang/ruby-2.5.7::gentoo failed (compile phase):
 *   emake failed

Emerging ruby with USE="-jemalloc" works fine.

# emerge --info =dev-lang/ruby-2.5.7
Portage 2.3.89 (python 3.7.6-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-9.2.0, glibc-2.29-r7, 5.5.4-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.5.4-gentoo-x86_64-Intel-R-_Core-TM-_i5-8400_CPU_@_2.80GHz-with-gentoo-2.6
KiB Mem:    16129752 total,   5909232 free
KiB Swap:   16777212 total,  16588540 free
Timestamp of repository gentoo: Mon, 02 Mar 2020 08:30:01 +0000
Head commit of repository gentoo: 494ccf92c75ddeefd5d35fe0f4f940d2f3ad67f2
sh dash 0.5.9.1-r3
ld GNU gold (Gentoo 2.32 p2 2.32.0) 1.16
ccache version 3.7.7 [disabled]
app-shells/bash:          4.4_p23-r1::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17-r1::gentoo, 3.7.6::gentoo
dev-util/ccache:          3.7.7::gentoo
dev-util/cmake:           3.14.6::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo, 2.33.1-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo
sys-devel/gcc-config:     2.2::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.19::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going y --with-bdeps y"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs cgroup compress-build-logs config-protect-if-modified distlocks ebuild-locks ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-elog split-log strict strict-keepdir test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6"
GENTOO_MIRRORS="http://mirrors.evowise.com/gentoo/ https://mirrors.evowise.com/gentoo/ http://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/ http://mirror.netcologne.de/gentoo/"
LANG="it_IT.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,--sort-common -flto=6"
LINGUAS="it it_IT"
MAKEOPTS="-j7 -l6"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aalib acl acpi activities adns alsa amd64 ao audiofile bash-completion bluetooth branding brotli bzip2 cairo caps cdda cddb cdparanoia cdr cli crypt css cups curl cxx dbus declarative dga djvu dri dts dvd dvdr emboss encode exif expat fbcon ffmpeg fftw flac fontconfig foomaticdb fortran ftp gd gdbm geoip gif gimp gmp gnutls gphoto2 gpm graphviz gtk handbook iconv icu idn imagemagick imlib ipv6 java javascript jbig jemalloc jpeg jpeg2k kde kipi kwallet lame lcms libass libnotify libsamplerate libtirpc lm_sensors lua lzma lzo mad mmap mng mp3 mp4 mpeg mplayer multilib musicbrainz ncurses nls nptl nsplugin offensive ogg openal opengl openmp pam pango pcre pdf phonon plasma png policykit postscript ppds pulseaudio qml qt5 rdesktop readline recode samba sctp sdl seccomp sndfile sockets speex spell split-usr sqlite ssl startup-notification svg symlink syslog systemd sysvipc taglib test theora threads tidy tiff truetype udev udisks unicode upower usb vaapi vala vcd vim-syntax vnc vorbis wavpack wayland widgets win32codecs wmf wxwidgets x264 xattr xcb xcomposite xine xml xpm xscreensaver xv xvid yahoo zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel virmidi" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="kodak ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="gnutls" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="it en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver wiki-publisher" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_7" PYTHON_TARGETS="python3_7" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-lang/ruby-2.5.7::gentoo was built with the following:
USE="gdbm ipv6 rdoc ssl -berkdb -debug -doc -examples -jemalloc -libressl -rubytests -socks5 -static-libs -tk -xemacs" ABI_X86="(64)"
CFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6 -fno-lto -fno-strict-aliasing"
CXXFLAGS="-O2 -pipe -frecord-gcc-switches -march=skylake -mabm -flto=6 -fno-lto -fno-strict-aliasing"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,--sort-common -flto=6 -fno-lto"

# emerge -1pqv =dev-lang/ruby-2.5.7
[ebuild   R   ] dev-lang/ruby-2.5.7  USE="gdbm ipv6 jemalloc rdoc ssl -berkdb -debug -doc -examples -libressl -rubytests -socks5 -static-libs -tk -xemacs"
Comment 1 Paolo Pedroni 2021-02-04 15:00:26 UTC 
Still in dev-lang/ruby-2.6.6-r2:

./miniruby -I./lib -I. -I.ext/common  -n \
-e 'BEGIN{version=ARGV.shift;mis=ARGV.dup}' \
-e 'END{abort "UNICODE version mismatch: #{mis}" unless mis.empty?}' \
-e '(mis.delete(ARGF.path); ARGF.close) if /ONIG_UNICODE_VERSION_STRING +"#{Regexp.quote(version)}"/o' \
12.1.0 ./enc/unicode/12.1.0/casefold.h ./enc/unicode/12.1.0/name2ctype.h 
./miniruby -I./lib -I. -I.ext/common  ./tool/generic_erb.rb -c -o encdb.h ./template/encdb.h.tmpl ./enc enc
./miniruby -I./lib -I. -I.ext/common  ./tool/transform_mjit_header.rb "x86_64-pc-linux-gnu-gcc " rb_mjit_header.h .ext/include/x86_64-linux/rb_mjit_min_header-2.6.6.h
<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")
<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")
<jemalloc>: Error in dlsym(RTLD_NEXT, "pthread_create")
make: *** [uncommon.mk:781: .rbconfig.time] Aborted (core dumped)
make: *** Waiting for unfinished jobs....
make: *** [uncommon.mk:1033: encdb.h] Aborted (core dumped)
make: *** [uncommon.mk:233: .ext/include/x86_64-linux/rb_mjit_min_header-2.6.6.h] Aborted (core dumped)
 * ERROR: dev-lang/ruby-2.6.6-r2::gentoo failed (compile phase):
 *   emake failed
Comment 2 Hans de Graaff gentoo-dev Security 2023-07-21 18:16:46 UTC 
The jemalloc USE flag is now masked for dev-lang/ruby, with the intention to remove it later.