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Bug 710970

Summary: sci-biology/trnascan-se-1.31 : ebuild uses colon (:) as a sed delimiter
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED FIXED    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 685160    
Attachments: emerge-info.txt
emerge-history.txt
environment
etc.portage.tbz2
sci-biology:trnascan-se-1.31:20200227-114438.log
temp.tbz2

Description Toralf Förster gentoo-dev 2020-02-27 17:57:44 UTC
>>> Source unpacked in /var/tmp/portage/sci-biology/trnascan-se-1.31/work
>>> Preparing source in /var/tmp/portage/sci-biology/trnascan-se-1.31/work/tRNAscan-SE-1.3.1 ...
 * Applying trnascan-se-1.31-ldflags.patch ...
 [ ok ]
sed: -e expression #5, char 83: unknown option to `s'
 * ERROR: sci-biology/trnascan-se-1.31::gentoo failed (prepare phase):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib_hardened-20200222-052733

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.6
  [3]   python3.7 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.41.0 *


ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Thu, 27 Feb 2020 10:08:10 +0000

emerge -qpvO sci-biology/trnascan-se
[ebuild  N    ] sci-biology/trnascan-se-1.31
Comment 1 Toralf Förster gentoo-dev 2020-02-27 17:57:46 UTC
Created attachment 616334 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-02-27 17:57:49 UTC
Created attachment 616336 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-02-27 17:57:52 UTC
Created attachment 616338 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-02-27 17:57:54 UTC
Created attachment 616340 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-02-27 17:57:57 UTC
Created attachment 616342 [details]
sci-biology:trnascan-se-1.31:20200227-114438.log
Comment 6 Toralf Förster gentoo-dev 2020-02-27 17:58:00 UTC
Created attachment 616344 [details]
temp.tbz2
Comment 7 Larry the Git Cow gentoo-dev 2022-07-02 23:38:45 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=24345bb7834073b0027c28b890a36ed5ffd35a12

commit 24345bb7834073b0027c28b890a36ed5ffd35a12
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2022-07-02 23:38:32 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2022-07-02 23:38:32 +0000

    sci-biology/trnascan-se: update EAPI 6 -> 8
    
    Closes: https://bugs.gentoo.org/710970
    Signed-off-by: Sam James <sam@gentoo.org>

 sci-biology/trnascan-se/trnascan-se-1.31-r1.ebuild | 53 ++++++++++++++++++++++
 1 file changed, 53 insertions(+)