Bug 710550

Summary:	sci-biology/vienna-rna-2.1.8 : sed: -e expression #2, char 78: unknown option to s
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED OBSOLETE
Severity:	normal	CC:	treecleaner
Priority:	Normal	Keywords:	PMASKED
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	685160
Deadline:	2020-10-09
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:vienna-rna-2.1.8:20200223-014038.log temp.tbz2

Description Toralf Förster gentoo-dev

2020-02-23 10:07:01 UTC

    (PDF):        /usr/share/doc/vienna-rna-2.1.8

sed: -e expression #2, char 78: unknown option to `s'
 * ERROR: sci-biology/vienna-rna-2.1.8::gentoo failed (configure phase):
 *   (no error message)
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome-20200218-201111

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.6
  [3]   python3.7 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.41.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.14.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm
ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Sun, 23 Feb 2020 00:07:18 +0000

emerge -qpvO sci-biology/vienna-rna
[ebuild  N    ] sci-biology/vienna-rna-2.1.8  USE="openmp -doc -python -static-libs" PYTHON_TARGETS="python2_7"

Comment 1 Toralf Förster gentoo-dev

2020-02-23 10:07:03 UTC

Created attachment 615202 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2020-02-23 10:07:06 UTC

Created attachment 615204 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2020-02-23 10:07:09 UTC

Created attachment 615206 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2020-02-23 10:07:12 UTC

Created attachment 615208 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2020-02-23 10:07:15 UTC

Created attachment 615210 [details]
logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2020-02-23 10:07:17 UTC

Created attachment 615212 [details]
sci-biology:vienna-rna-2.1.8:20200223-014038.log

Comment 7 Toralf Förster gentoo-dev

2020-02-23 10:07:20 UTC

Created attachment 615214 [details]
temp.tbz2

Comment 8 Michał Górny archtester

2020-10-09 07:24:31 UTC

Package removed.