| Summary: | sci-biology/seaview-4.6 : fails to build with -fno-common or gcc-10 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 705764 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 sci-biology:seaview-4.6:20200201-230151.log temp.tbz2 |
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Created attachment 610754 [details]
emerge-info.txt
Created attachment 610756 [details]
emerge-history.txt
Created attachment 610758 [details]
environment
Created attachment 610760 [details]
etc.portage.tbz2
Created attachment 610762 [details]
sci-biology:seaview-4.6:20200201-230151.log
Created attachment 610764 [details]
temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cc1e91fc1e8a7302af0ab19c8ad3c5ef5721ec92 commit cc1e91fc1e8a7302af0ab19c8ad3c5ef5721ec92 Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-11-01 18:36:14 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-11-01 18:36:14 +0000 sci-biology/seaview: Port to EAPI 7 * Fix building against GCC 10 / -fno-common * Fix building against Clang Closes: https://bugs.gentoo.org/707842 Closes: https://bugs.gentoo.org/741198 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> ...eaview-4.6-Wreserved-user-defined-literal.patch | 76 ++++++++++++++ .../seaview/files/seaview-4.6-fno-common.patch | 110 +++++++++++++++++++++ .../{seaview-4.6.ebuild => seaview-4.6-r1.ebuild} | 29 +++--- 3 files changed, 203 insertions(+), 12 deletions(-) |
csrc/phyml_util.c:47:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -o seaview -Wl,-O1 -Wl,--as-needed seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: dnapars.o:(.bss+0x0): multiple definition of `progname'; seaview.o:(.data.rel.local+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: protpars.o:(.bss+0x2420): multiple definition of `chars'; dnapars.o:(.bss+0x20d0): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_hardened-libressl_test-20200126-104546 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.7 [3] python3.6 [4] python2.7 (fallback) [5] pypy3 (fallback) Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) AdoptOpenJDK JRE 8.242_p08 [openjdk-jre-bin-8] Available Java Virtual Machines: [1] openjdk-jre-bin-8 system-vm ghc: The Glorious Glasgow Haskell Compilation System, version 8.0.2 repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Sat, 01 Feb 2020 21:29:19 +0000 emerge -qpvO sci-biology/seaview [ebuild N ] sci-biology/seaview-4.6 USE="xft"