| Summary: | sci-biology/vienna-rna-2.1.8 : fails to build with -fno-common or gcc-10 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED OBSOLETE | ||
| Severity: | normal | CC: | treecleaner |
| Priority: | Normal | Keywords: | PMASKED |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 705764, 735438 | ||
| Deadline: | 2020-10-09 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:vienna-rna-2.1.8:20200129-004812.log temp.tbz2 |
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Created attachment 607576 [details]
emerge-info.txt
Created attachment 607578 [details]
emerge-history.txt
Created attachment 607580 [details]
environment
Created attachment 607582 [details]
etc.portage.tbz2
Created attachment 607584 [details]
logs.tbz2
Created attachment 607586 [details]
sci-biology:vienna-rna-2.1.8:20200129-004812.log
Created attachment 607588 [details]
temp.tbz2
Package removed. |
| int size_t {aka long unsigned int} | %ld x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../H -O2 -pipe -march=native -fno-common -c -o cmdline.o cmdline.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-common -fopenmp -L../lib -Wl,-O1 -Wl,--as-needed -o Kinfold baum.o cache.o globals.o main.o nachbar.o cmdline.o -lRNA -lm /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: globals.o:(.bss+0x40): multiple definition of `GAV'; baum.o:(.bss+0x40): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: globals.o:(.bss+0x0): multiple definition of `GTV'; baum.o:(.bss+0x0): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_systemd-20200126-201521 ------------------------------------------------------------------- Please see the tracker bug for details. gcc-config -l: [1] x86_64-pc-linux-gnu-9.2.0 * clang: clang version 9.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/9/bin llvm: 9.0.1 Available Python interpreters, in order of preference: [1] python3.8 [2] python3.6 [3] python3.7 (fallback) [4] python2.7 (fallback) Available Ruby profiles: [1] ruby24 (with Rubygems) [2] ruby25 (with Rubygems) * Available Rust versions: [1] rust-1.40.0 * java-config: The following VMs are available for generation-2: *) AdoptOpenJDK 8.242_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm repository: ==> /var/db/repos/gentoo/metadata/timestamp.chk <== Tue, 28 Jan 2020 23:46:22 +0000 emerge -qpvO sci-biology/vienna-rna [ebuild N ] sci-biology/vienna-rna-2.1.8 USE="openmp -doc -python -static-libs" PYTHON_TARGETS="python2_7"