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Bug 705382

Summary: dev-python/intervaltree-3.0.2 should depend on >=dev-python/sortedcontainers-2.0
Product: Gentoo Linux Reporter: Anton Bolshakov <anton.bugs>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: UNCONFIRMED ---    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---

Description Anton Bolshakov 2020-01-14 01:50:38 UTC
Currently, the dev-python/sortedcontainers-1.5.7 is stable and intervaltree breaks due to the following requirments:
https://github.com/chaimleib/intervaltree/blob/3.0.2/setup.py#L84
    install_requires=['sortedcontainers >= 2.0, < 3.0'],

emerge --info
Portage 2.3.79 (python 3.6.9-final-0, default/linux/amd64/17.1/hardened, gcc-9.2.0, glibc-2.29-r7, 5.2.14-pentoo x86_64)
=================================================================
System uname: Linux-5.2.14-pentoo-x86_64-Intel-R-_Core-TM-_i5-3320M_CPU_@_2.60GHz-with-gentoo-2.6
KiB Mem:     7968740 total,   3784632 free
KiB Swap:    4194300 total,   4008020 free
Timestamp of repository gentoo: Mon, 13 Jan 2020 13:45:01 +0000
Head commit of repository gentoo: c9dc8c0bd3f814e3abc913d07fb0935a78797258
Head commit of repository dotnet: 17eface647386a89438ce31c1d6f14555a2b5e53

Timestamp of repository eclipse: Thu, 12 Dec 2019 13:46:34 +0000
Head commit of repository eclipse: e2ac527a1b3887d3ac2aa1f15982083773af6d41

Head commit of repository pentoo: 87d9e3996306e1d8d44fce66a0df85e4ccd59f59

sh bash 4.4_p23-r1
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          4.4_p23-r1::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17::gentoo, 3.6.9::gentoo
dev-util/cmake:           3.14.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.1-r2::gentoo
sys-devel/binutils:       2.32-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.19::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.asia.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 

dotnet
    location: /var/db/overlays/dotnet
    sync-type: git
    sync-uri: https://github.com/gentoo/dotnet.git
    masters: gentoo

eclipse
    location: /var/db/repos/eclipse
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/eclipse.git
    masters: gentoo

local-overlay
    location: /var/db/overlays/local
    masters: gentoo
    priority: 0

pentoo
    location: /var/db/overlays/pentoo-overlay
    sync-type: git
    sync-uri: https://github.com/pentoo/pentoo-overlay
    masters: gentoo

steam-overlay
    location: /var/db/overlays/steam-overlay
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe -frecord-gcc-switches"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -frecord-gcc-switches -frecord-gcc-switches"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -frecord-gcc-switches -frecord-gcc-switches"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
INSTALL_MASK="*.la"
LANG="en_SG.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
LINGUAS="en ru"
MAKEOPTS="-j4"
Comment 1 Jakov Smolić archtester gentoo-dev 2021-05-06 09:21:02 UTC
>=dev-python/sortedcontainers-2.0 are the only versions present in the tree now
Comment 2 Anton Bolshakov 2021-05-07 02:22:12 UTC
Sorry, not fixed.

The luck of both conditions (>= 2.0, < 3.0') means that the bug will be back with dev-python/sortedcontainers-3 in future.

Please add these borders conditions.