Summary: | sci-chemistry/avogadro2-1.90.0_p20180211 - segmentation fault after "Checking for generator scripts in /usr/bin/../lib64/avogadro2/scripts/workflows" | ||
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Product: | Gentoo Linux | Reporter: | Petr F. Kartsev <petr.kartsev> |
Component: | Current packages | Assignee: | Gentoo Chemistry-Related Packages <sci-chemistry> |
Status: | RESOLVED FIXED | ||
Severity: | normal | ||
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- |
Description
Petr F. Kartsev
2019-10-27 10:35:01 UTC
(In reply to Petr F. Kartsev from comment #0) > clicking Panel (with command avogadro2 %f) almost always crashes. > starting from command line 'avogadro2' gives two outcomes with equal > probability: > > ----------------- (2) successfully started ----------------- > Extension plugins dynamically found... 24 > OBProcess::executeObabel: Running "obabel" "-L formats read" > OBProcess::executeObabel: Running "obabel" "-L formats write" > OBProcess::executeObabel: Running "obabel" "-V" > "obabel not found! Disabling Open Babel plugin actions." > Checking for generator scripts in > "/usr/bin/../lib64/avogadro2/scripts/inputGenerators" > Checking for generator scripts in > "/home/USERNAME/.local/share/OpenChemistry/Avogadro/dev/inputGenerators" > Checking for generator scripts in > "/usr/local/share/OpenChemistry/Avogadro/dev/inputGenerators" > Checking for generator scripts in > "/usr/share/OpenChemistry/Avogadro/dev/inputGenerators" > Checking for file format scripts in > "/usr/bin/../lib64/avogadro2/scripts/formatScripts" > Error retrieving metadata for file format script: > "/usr/lib64/avogadro2/scripts/formatScripts/cclibScript.py" > ("Error running script '/usr/bin/python > /usr/lib64/avogadro2/scripts/formatScripts/cclibScript.py --metadata': > Abnormal exit status 1 (Unknown error.: Unknown error)\n\nOutput:\nTraceback > (most recent call last):\n File > \"/usr/lib64/avogadro2/scripts/formatScripts/cclibScript.py\", line 22, in > <module>\n from cclib.io.ccio import ccopen\nModuleNotFoundError: No > module named 'cclib'\n") This is what you reported in bug #698642 so let's focus on the other problem here. The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4f9bfa15743bd562d43831e436f4419790fd7560 commit 4f9bfa15743bd562d43831e436f4419790fd7560 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2020-03-14 17:31:36 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2020-03-14 17:32:07 +0000 sci-chemistry/avogadro2: Bump to 1.93.0 Closes: https://bugs.gentoo.org/695180 Closes: https://bugs.gentoo.org/698644 Package-Manager: Portage-2.3.93, Repoman-2.3.20 Signed-off-by: Pacho Ramos <pacho@gentoo.org> sci-chemistry/avogadro2/Manifest | 1 + sci-chemistry/avogadro2/avogadro2-1.93.0.ebuild | 56 +++++++++++++++++++++++++ 2 files changed, 57 insertions(+) |