Bug 696098

Summary:	sci-chemistry/gromacs-2019.4 : rm: cannot remove /.../GMXRC* : No such file or directory
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Alexey Shvetsov <alexxy>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci-chemistry
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-chemistry:gromacs-2019.4:20191002-204922.log.bz2 temp.tbz2

Description Toralf Förster gentoo-dev

2019-10-03 07:45:42 UTC

-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2019.4/image/usr/share/cmake/gmxapi/gmxapi-config-version.cmake
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-2019.4/image/usr/share/cmake/gmxapi/gmxapi-config.cmake
rm: cannot remove '/var/tmp/portage/sci-chemistry/gromacs-2019.4/imageusr/bin/GMXRC*': No such file or directory
 * ERROR: sci-chemistry/gromacs-2019.4::gentoo failed (install phase):
 *   (no error message)
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-20190930-182237

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.0 (tags/RELEASE_900/final)
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.0
Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *

java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.13.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Wed, 02 Oct 2019 19:46:18 +0000

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2019.4  USE="X doc fftw gmxapi hwloc lmfit offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7"

Comment 1 Toralf Förster gentoo-dev

2019-10-03 07:45:45 UTC

Created attachment 591636 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2019-10-03 07:45:48 UTC

Created attachment 591638 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2019-10-03 07:45:51 UTC

Created attachment 591640 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2019-10-03 07:45:54 UTC

Created attachment 591642 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2019-10-03 07:45:57 UTC

Created attachment 591644 [details]
logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2019-10-03 07:46:00 UTC

Created attachment 591646 [details]
sci-chemistry:gromacs-2019.4:20191002-204922.log.bz2

Comment 7 Toralf Förster gentoo-dev

2019-10-03 07:46:04 UTC

Created attachment 591648 [details]
temp.tbz2

Comment 8 Alexey Shvetsov archtester

2019-10-04 11:22:30 UTC

Was fixed by this commit

commit c660b3597c9b47d7e8697b1efdc8b409eeab1a65
Author: Thomas Deutschmann <whissi@gentoo.org>
Date:   Thu Oct 3 00:19:27 2019 +0200

    sci-chemistry/gromacs: add missing trailing slashes
    
    Package-Manager: Portage-2.3.76, Repoman-2.3.17
    Signed-off-by: Thomas Deutschmann <whissi@gentoo.org>