| Summary: | sci-libs/armadillo[hdf5]: detection of HDF5 broken, ARMA_HDF5_INCLUDE_DIR set to NOTFOUND breaking builds. | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Jan-Matthias Braun <jan_braun> |
| Component: | Current packages | Assignee: | Andreas K. Hüttel <dilfridge> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | sci |
| Priority: | Normal | Keywords: | PATCH, PullRequest |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://github.com/gentoo/gentoo/pull/14744 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | Fix HDF5 includes by forcing HDF5_INCLUDE_DIRS. Caution: also sets DETECT_HDF5, which is not strictly necessary for the problem at hand. | ||
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b2dab37206f6a0b4f10c4386694166441831b784 commit b2dab37206f6a0b4f10c4386694166441831b784 Author: Andreas K. Huettel <dilfridge@gentoo.org> AuthorDate: 2020-02-22 20:12:34 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-02-22 20:12:34 +0000 sci-libs/armadillo: Version bump; fix HDF5 detection Patch by Jan-Matthias Braun Closes: https://bugs.gentoo.org/690986 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas K. Huettel <dilfridge@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org> sci-libs/armadillo/Manifest | 1 + sci-libs/armadillo/armadillo-9.850.1.ebuild | 148 ++++++++++++++++++++++++++++ 2 files changed, 149 insertions(+) Thanks a lot! |
Created attachment 584972 [details, diff] Fix HDF5 includes by forcing HDF5_INCLUDE_DIRS. Caution: also sets DETECT_HDF5, which is not strictly necessary for the problem at hand. When emerging with hdf5 support, use of armadillo will result in failed compiler calls with: fatal error: NOTFOUND/hdf5.h: No such file or directory It looks like HDF5 detection is broken. (Especially for the C-only component?) The armadillo ebuild is overwriting the corresponding HDF5 variables, i.e., -DHDF5_FOUND=ON and-DHDF5_LIBRARIES="-lhdf5". But HDF5_INCLUDE_DIRS is not set. Setting HDF5_INCLUDE_DIRS=/usr/include fixes this. Caution: The attached patch is also setting DETECT_HDF5, which is probably not necessary, but it seems a possibility to turn detection off completely, when not using HDF5.