Bug 689202

Summary:	sci-biology/plink-1.90_pre140514 : plink_calc.c:(.text+<snip>): undefined reference to cblas_dger
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:plink-1.90_pre140514:20190703-014455.log

Description Toralf Förster gentoo-dev

2019-07-03 17:42:00 UTC

      |                                          ^~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccxRreer.o: in function `reml_em_one_trait(double*, double*, double*, double*, double, unsigned int)':
plink_calc.c:(.text+0x8bd8): undefined reference to `cblas_dger'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8c64): undefined reference to `cblas_dsymv'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8c98): undefined reference to `cblas_dsymv'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8cb6): undefined reference to `cblas_ddot'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-desktop-plasma_20190630-032303

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems) *

java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.12.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpvO sci-biology/plink
[ebuild  N    ] sci-biology/plink-1.90_pre140514

Comment 1 Toralf Förster gentoo-dev

2019-07-03 17:42:03 UTC

Created attachment 581858 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2019-07-03 17:42:06 UTC

Created attachment 581860 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2019-07-03 17:42:09 UTC

Created attachment 581862 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2019-07-03 17:42:12 UTC

Created attachment 581864 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2019-07-03 17:42:14 UTC

Created attachment 581866 [details]
logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2019-07-03 17:42:17 UTC

Created attachment 581868 [details]
sci-biology:plink-1.90_pre140514:20190703-014455.log