Bug 688700

Summary:	sci-biology/lagan-2.0-r3 : make: *** [Makefile:<snip>: all] Error 2
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 sci-biology:lagan-2.0-r3:20190625-172738.log temp.tbz2

Description Toralf Förster gentoo-dev

2019-06-25 17:35:09 UTC

make[1]: *** [Makefile:14: ../chaos] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/lagan-2.0-r3/work/lagan20/src'
make: *** [Makefile:2: all] Error 2
 * ERROR: sci-biology/lagan-2.0-r3::gentoo failed (compile phase):
 *   emake failed
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-systemd_libressl-test_20190623-103445

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-8.3.1
 [2] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)

Available Rust versions:
  (none found)



emerge -qpvO sci-biology/lagan
[ebuild  N    ] sci-biology/lagan-2.0-r3

Comment 1 Toralf Förster gentoo-dev

2019-06-25 17:35:12 UTC

Created attachment 580876 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2019-06-25 17:35:15 UTC

Created attachment 580878 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2019-06-25 17:35:17 UTC

Created attachment 580880 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2019-06-25 17:35:20 UTC

Created attachment 580882 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2019-06-25 17:35:22 UTC

Created attachment 580884 [details]
sci-biology:lagan-2.0-r3:20190625-172738.log

Comment 6 Toralf Förster gentoo-dev

2019-06-25 17:35:25 UTC

Created attachment 580886 [details]
temp.tbz2

Comment 7 Larry the Git Cow gentoo-dev

2020-11-01 18:37:06 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=053ec438e912e15f1a98959c59d4f08903d31138

commit 053ec438e912e15f1a98959c59d4f08903d31138
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-11-01 18:36:21 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-11-01 18:36:21 +0000

    sci-biology/lagan: Port to EAPI 7
    
    * Fix building against GCC 10 / -fno-common
    * Fix building against C99 / -O0
    * Fix broken build system
    * Import patches from Debian
    
    Closes: https://bugs.gentoo.org/685736
    Closes: https://bugs.gentoo.org/688700
    Closes: https://bugs.gentoo.org/707404
    Package-Manager: Portage-3.0.8, Repoman-3.0.2
    Signed-off-by: David Seifert <soap@gentoo.org>

 .../lagan/files/lagan-2.0-C99-static-inline.patch  | 258 +++++++++++
 .../lagan/files/lagan-2.0-ambiguous-end.patch      |  49 +++
 .../files/lagan-2.0-conflicting-getline.patch      |  24 ++
 sci-biology/lagan/files/lagan-2.0-fix-c++14.patch  | 473 ---------------------
 sci-biology/lagan/files/lagan-2.0-gcc-10.patch     |  27 ++
 sci-biology/lagan/files/lagan-2.0-gcc-4.8.patch    |  25 ++
 sci-biology/lagan/files/lagan-2.0-gcc-9.patch      |  25 ++
 sci-biology/lagan/files/lagan-2.0-gcc4.3.patch     |  23 -
 ...an-2.0-flags.patch => lagan-2.0-makefile.patch} | 109 ++---
 .../files/lagan-2.0-qa-implicit-declarations.patch |  63 +--
 sci-biology/lagan/lagan-2.0-r3.ebuild              |  71 ----
 sci-biology/lagan/lagan-2.0-r4.ebuild              |  67 +++
 12 files changed, 550 insertions(+), 664 deletions(-)