Bug 688472 – dev-db/pgagent-4.0.0 : /.../ld: CMakeFiles/.../connection.cpp.o: undefined reference to symbol pthread_join@@GLIBC_2.2.5

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2019-06-22 12:43:14 UTC]

FAILED: pgagent 
: && /usr/bin/x86_64-pc-linux-gnu-g++  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed    -rdynamic CMakeFiles/pgagent.dir/connection.cpp.o CMakeFiles/pgagent.dir/job.cpp.o CMakeFiles/pgagent.dir/misc.cpp.o CMakeFiles/pgagent.dir/pgAgent.cpp.o CMakeFiles/pgagent.dir/precomp.cpp.o CMakeFiles/pgagent.dir/unix.cpp.o CMakeFiles/pgagent.dir/win32.cpp.o  -o pgagent -L/usr/lib64/postgresql-11/lib64 -Wl,-rpath,/usr/lib64/postgresql-11/lib64: -lpq -lboost_filesystem-mt -lboost_regex-mt -lboost_date_time-mt -lboost_thread-mt -lboost_system-mt -lboost_chrono-mt -lboost_atomic-mt && :
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/pgagent.dir/connection.cpp.o: undefined reference to symbol 'pthread_join@@GLIBC_2.2.5'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /lib64/libpthread.so.0: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-no-multilib-hardened_20190617-141910

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
  [4]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.35.0 *
java-config:
The following VMs are available for generation-2:


emerge -qpvO dev-db/pgagent
[ebuild  N    ] dev-db/pgagent-4.0.0

[Comment 1 Toralf Förster 2019-06-22 12:43:17 UTC]

Created attachment 580420 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2019-06-22 12:43:20 UTC]

Created attachment 580422 [details]
dev-db:pgagent-4.0.0:20190622-121314.log

[Comment 3 Toralf Förster 2019-06-22 12:43:22 UTC]

Created attachment 580424 [details]
emerge-history.txt

[Comment 4 Toralf Förster 2019-06-22 12:43:25 UTC]

Created attachment 580426 [details]
environment

[Comment 5 Toralf Förster 2019-06-22 12:43:28 UTC]

Created attachment 580428 [details]
etc.portage.tbz2

[Comment 6 Toralf Förster 2019-06-22 12:43:30 UTC]

Created attachment 580430 [details]
logs.tbz2

[Comment 7 Toralf Förster 2019-06-22 12:43:33 UTC]

Created attachment 580432 [details]
temp.tbz2

[Comment 8 Larry the Git Cow 2020-02-18 19:03:59 UTC]

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cf58dfea3eb65e157aa56bc11cc795b49c629c1c

commit cf58dfea3eb65e157aa56bc11cc795b49c629c1c
Author:     Aaron W. Swenson <[e-mail]>
AuthorDate: 2020-02-18 19:03:37 +0000
Commit:     Aaron W. Swenson <[e-mail]>
CommitDate: 2020-02-18 19:03:44 +0000

    dev-db/pgagent: Fix pthread linking
    
    Bug: https://bugs.gentoo.org/688472
    Package-Manager: Portage-2.3.84, Repoman-2.3.16
    Signed-off-by: Aaron W. Swenson <[e-mail]>

 .../files/pgagent-4.0.0-pthreads-linking.patch     | 33 +++++++++++++
 dev-db/pgagent/pgagent-4.0.0-r1.ebuild             | 55 ++++++++++++++++++++++
 2 files changed, 88 insertions(+)

[Comment 9 Larry the Git Cow 2020-12-17 14:10:15 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=916d0dc952cabaed686171491dfb038acdcb3438

commit 916d0dc952cabaed686171491dfb038acdcb3438
Author:     Aaron W. Swenson <[e-mail]>
AuthorDate: 2020-12-17 14:09:02 +0000
Commit:     Aaron W. Swenson <[e-mail]>
CommitDate: 2020-12-17 14:09:02 +0000

    dev-db/pgagent: Cleanup
    
    Closes: https://bugs.gentoo.org/688472
    Signed-off-by: Aaron W. Swenson <[e-mail]>

 dev-db/pgagent/Manifest                            |   1 -
 dev-db/pgagent/files/add-log-timestamps.patch      | 535 ---------------------
 .../files/fix-dbconn-getlasterror-crash.patch      |  32 --
 dev-db/pgagent/files/fix-job-success-test.patch    |  30 --
 dev-db/pgagent/files/postgres-10-build-fix.patch   |  52 --
 .../pgagent/files/save-stderr-jobstep-output.patch |  79 ---
 dev-db/pgagent/pgagent-3.4.0-r3.ebuild             |  78 ---
 dev-db/pgagent/pgagent-4.0.0.ebuild                |  53 --
 8 files changed, 860 deletions(-)