Bug 679298

Summary:	dev-python/numpy-1.16.1 failed to build
Product:	Gentoo Linux	Reporter:	klaus818
Component:	New packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	RESOLVED DUPLICATE
Severity:	normal	CC:	dominik, info, python, theli.ua, viklevin2, whissi, xaviermiller
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
See Also:	https://bugs.gentoo.org/show_bug.cgi?id=660754
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description klaus818 2019-03-03 06:11:56 UTC

Created attachment 567528 [details]
build.log

Portage 2.3.62 (python 3.6.6-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-8.3.0, glibc-2.29, 4.20.13-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.20.13-gentoo-x86_64-AMD_Ryzen_5_2600X_Six-Core_Processor-with-gentoo-2.6
KiB Mem:    16443392 total,  10574020 free
KiB Swap:   40695804 total,  40695804 free
Timestamp of repository gentoo: Sun, 03 Mar 2019 05:30:01 +0000
Head commit of repository gentoo: 40935d5171a88ca21159ee9db7c2d780b4473a22
sh bash 5.0_p2
ld GNU ld (Gentoo 2.32 p1) 2.32.0
app-shells/bash:          5.0_p2::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.28.0::gentoo
dev-lang/python:          2.7.15::gentoo, 3.6.6::gentoo
dev-util/cmake:           3.13.4::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/sandbox:         2.15::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.32::gentoo
sys-devel/gcc:            8.3.0::gentoo
sys-devel/gcc-config:     2.0::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.20::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps=y"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs candy config-protect-if-modified distlocks ebuild-locks fail-clean fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize"
GENTOO_MIRRORS="http://mirrors.evowise.com/gentoo/ http://gentoo.mirrors.ovh.net/gentoo-distfiles/ http://mirror.leaseweb.com/gentoo/"
LANG="de_DE.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j12"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi activities alsa amd64 berkdb branding bzip2 cairo cdda cdr cli crypt cups cxx dbus declarative dri dropbox dts dvd dvdr emboss encode epub exif fam ffmpeg flac fortran gdbm gif glamor gpm grub gtk iconv ipv6 ithreads jpeg kde kipi kwallet lcms ldap libnotify libtirpc lm_sensors lto mad matroska mng mp3 mp4 mpeg mtp multilib ncurses nls nptl office ogg opencl opengl openmp pam pango pcre pdf pgo phonon pim plasma png policykit postproc ppds pulseaudio qml qt5 readline scanner sdl seccomp semantic-desktop spell ssl startup-notification svg systemd tcpd threads tiff truetype udev udisks unicode upower usb vaapi vc vdpau vorbis vpx vulkan webp widgets wxwidgets x264 x265 xattr xcb xcomposite xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="sony_dscf1" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" L10N="de" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AMDGPU" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24" SANE_BACKENDS="hp" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-python/numpy-1.15.4::gentoo was built with the following:
USE="-doc -lapack -test" ABI_X86="(64)" PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5 -python3_7"
CFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize -fno-strict-aliasing"
CXXFLAGS="-march=native -O2 -pipe -ftree-vectorize -ftree-slp-vectorize -fno-strict-aliasing"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -shared"

Comment 1 Stefan Strogin gentoo-dev

2019-03-03 09:10:34 UTC

Looks like a bug in parallel build. Successfully builds with -j 1 for me, and fails with -j 4.

Comment 2 peter@prh.myzen.co.uk 2019-03-03 09:42:07 UTC

(In reply to Stefan Strogin from comment #1)
> Looks like a bug in parallel build. Successfully builds with -j 1 for me,
> and fails with -j 4.

Confirmed here.

Comment 3 Thomas Deutschmann (RETIRED) gentoo-dev

2019-03-03 16:15:48 UTC


*** This bug has been marked as a duplicate of bug 660754 ***