Bug 675878 – dev-db/mysql-5.7.24 - ../archive_output_directory/libmysqlclient.a(mf_iocache2.c.o): In function `my_b_fill': mf_iocache2.c:(.text+0x1b0): undefined reference to `mysql_file_seek'

• Product: Gentoo Linux
• Status: RESOLVED DUPLICATE

[Description Sophie Hamilton 2019-01-19 21:35:44 UTC]

Created attachment 562214 [details]
build.log

When installing dev-db/mysql-5.7.24 (upgrading from dev-db/mysql-5.7.23-r2), I'm getting linker errors while linking the mysqlbinlog binary:

> cd /var/tmp/portage/dev-db/mysql-5.7.24/work/mysql-5.7.24_build/client && /usr/bin/cmake -E cmake_link_script CMakeFiles/mysqlbinlog.dir/link.txt --verbose=1
> /usr/bin/x86_64-pc-linux-gnu-g++  -march=native -O2 -pipe -felide-constructors -fno-strict-aliasing -Wall -Wextra -Wformat-security -Wvla -Wimplicit-fallthrough=2 -Woverloaded-virtual -Wno-unused-parameter -DNDEBUG -DDBUG_OFF  -Wl,-O1 -Wl,--as-needed CMakeFiles/mysqlbinlog.dir/mysqlbinlog.cc.o  -o mysqlbinlog -lpthread ../archive_output_directory/libmysqlclient.a ../libbinlogevents/lib/libbinlogevents.a -lssl -lcrypto -ldl ../archive_output_directory/libmysys.a ../archive_output_directory/libdbug.a ../archive_output_directory/libmysys.a ../archive_output_directory/libdbug.a -lz -lm -lrt -latomic ../archive_output_directory/libstrings.a -lpthread
> ../archive_output_directory/libmysqlclient.a(mf_iocache2.c.o): In function `my_b_fill':
> mf_iocache2.c:(.text+0x1b0): undefined reference to `mysql_file_seek'
> mf_iocache2.c:(.text+0x1db): undefined reference to `mysql_file_read'
> ../archive_output_directory/libmysqlclient.a(mf_iocache2.c.o): In function `my_b_filelength':
> mf_iocache2.c:(.text+0x3c9): undefined reference to `mysql_file_seek'
> collect2: error: ld returned 1 exit status

emerge --info (please note that almost all non-gentoo repositories are */*-masked except for very specific packages):

Portage 2.3.51 (python 2.7.15-final-0, default/linux/amd64/17.0, gcc-7.3.0, glibc-2.27-r6, 4.15.4-gentoo x86_64)
=================================================================
System uname: Linux-4.15.4-gentoo-x86_64-Intel-R-_Core-TM-_i7-5820K_CPU_@_3.30GHz-with-gentoo-2.6
KiB Mem:    32916196 total,  29485052 free
KiB Swap:    8191996 total,   8191996 free
Timestamp of repository gentoo: Sat, 19 Jan 2019 00:45:01 +0000
sh bash 4.4_p23-r1
ld GNU ld (Gentoo 2.30 p5) 2.30.0
ccache version 3.3.4 [disabled]
app-shells/bash:          4.4_p23-r1::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.26.2::gentoo
dev-lang/python:          2.7.15::gentoo, 3.4.8::gentoo, 3.6.5::gentoo
dev-util/ccache:          3.3.4-r1::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.38.3-r1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.30-r4::gentoo
sys-devel/gcc:            7.3.0-r3::gentoo
sys-devel/gcc-config:     2.0::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.14-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.27-r6::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: webrsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

sph-local
    location: /opt/portage-overlay
    masters: gentoo
    priority: 0

abendbrot
    location: /var/lib/layman/abendbrot
    masters: gentoo
    priority: 50

anomen
    location: /var/lib/layman/anomen
    masters: gentoo
    priority: 50

gambas-overlay
    location: /var/lib/layman/gambas-overlay
    masters: gentoo
    priority: 50

jorgicio
    location: /var/lib/layman/jorgicio
    masters: gentoo
    priority: 50

lmiphay
    location: /var/lib/layman/lmiphay
    masters: gentoo
    priority: 50

netfab
    location: /var/lib/layman/netfab
    masters: gentoo
    priority: 50

palemoon
    location: /var/lib/layman/palemoon
    masters: gentoo
    priority: 50

pentoo
    location: /var/lib/layman/pentoo
    masters: gentoo
    priority: 50

stuff
    location: /var/lib/layman/stuff
    masters: gentoo
    priority: 50

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/avfs/extfs /usr/share/gnupg/qualified.txt /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--ask-enter-invalid --autounmask-keep-masks y"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync webrsync-gpg xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en-GB"
MAKEOPTS="-j13"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aacplus acl acpi alsa amd64 amr berkdb bluray bzip2 cairo cdda cddb cdio cdparanoia cli crypt cups cxx dbus dri dts dvd flac fluidsynth fontconfig fortran gdbm gpm gtk ibus iconv icu ipv6 jpeg libnotify libtirpc lzma mad mmx modplug mp3 mtp multilib ncurses nls nptl ogg opencl opengl openmp pam pcre png qt3support qt5 readline seccomp sound sse sse2 ssl startup-notification svg tcl tcpd theora tk truetype unicode v4l vdpau vim-syntax vorbis vulkan xattr xv xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en en-GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="x86_64 arm i386 mips mipsel ppc sparc" QEMU_USER_TARGETS="aarch64 alpha arm i386 m68k mips mipsel ppc sparc x86_64" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="nouveau amdgpu radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Sophie Hamilton 2019-01-19 21:36:44 UTC]

Created attachment 562216 [details]
environment

[Comment 2 Sophie Hamilton 2019-01-19 21:40:16 UTC]

Output of `emerge -pqv '=dev-db/mysql-5.7.24::gentoo'`:

> [ebuild     U ] dev-db/mysql-5.7.24 [5.7.23-r2] USE="perl -cjk (-client-libs) -cracklib -debug -experimental -jemalloc -latin1 -libressl -numa -profiling (-selinux) -server -static -static-libs -systemtap -tcmalloc -test -yassl" ABI_X86="(64) -32 (-x32)"

[Comment 3 Thomas Deutschmann (RETIRED) 2019-01-26 19:09:14 UTC]

Don't use USE=-server ... this is unsupported and going away.

*** This bug has been marked as a duplicate of bug 671722 ***