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Bug 672044

Summary: emerge kde-apps/kio-extras-18.04.3-r1 failed with Could not find 64-bit XDR datatype functions
Product: Gentoo Linux Reporter: Robby Klehm <rklehm>
Component: Current packagesAssignee: Gentoo KDE team <kde>
Status: RESOLVED INVALID    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: x86   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---

Description Robby Klehm 2018-11-27 07:54:19 UTC 
My current update @world keeps failing at kde-apps/kio-extras. I found an related patch at https://forums.gentoo.org/viewtopic-t-1077084-start-0.html but it not applied at kio-extras-18.04.3-r1. Any help on this would be fine!

---
kmubox ~ # emerge -avO kde-apps/kio-extras

These are the packages that would be merged, in order:

[ebuild     U  ] kde-apps/kio-extras-18.04.3-r1:5::gentoo [17.08.3:5::gentoo] USE="activities handbook man phonon sftp -debug -mtp -openexr -samba -taglib -test (-htmlthumbs%) (-slp%)" 0 KiB

Total: 1 package (1 upgrade), Size of downloads: 0 KiB

Would you like to merge these packages? [Yes/No] yes

>>> Verifying ebuild manifests

>>> Emerging (1 of 1) kde-apps/kio-extras-18.04.3-r1::gentoo
 * kio-extras-18.04.3.tar.xz BLAKE2B SHA512 size ;-) ...                 [ ok ]
>>> Unpacking source...
>>> Unpacking kio-extras-18.04.3.tar.xz to /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work
>>> Source unpacked in /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work
>>> Preparing source in /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build"
cmake -C /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_TESTING=OFF -DCMAKE_DISABLE_FIND_PACKAGE_Qt5Test=ON -DKDE_INSTALL_USE_QT_SYS_PATHS=ON -DCMAKE_DISABLE_FIND_PACKAGE_Qt5WebEngineWidgets=ON -DCMAKE_DISABLE_FIND_PACKAGE_KF5Activities=OFF -DCMAKE_DISABLE_FIND_PACKAGE_Gperf=OFF -DCMAKE_DISABLE_FIND_PACKAGE_Mtp=ON -DCMAKE_DISABLE_FIND_PACKAGE_OpenEXR=ON -DCMAKE_DISABLE_FIND_PACKAGE_Phonon4Qt5=OFF -DCMAKE_DISABLE_FIND_PACKAGE_Samba=ON -DCMAKE_DISABLE_FIND_PACKAGE_LibSSH=OFF -DCMAKE_DISABLE_FIND_PACKAGE_Taglib=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build/gentoo_toolchain.cmake  /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3
loading initial cache file /var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 7.3.0
-- The CXX compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/i686-pc-linux-gnu/gcc-bin/7.3.0/i686-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/i686-pc-linux-gnu/gcc-bin/7.3.0/i686-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/i686-pc-linux-gnu/gcc-bin/7.3.0/i686-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/i686-pc-linux-gnu/gcc-bin/7.3.0/i686-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found KF5Archive: /usr/lib/cmake/KF5Archive/KF5ArchiveConfig.cmake (found version "5.50.0")
-- Found KF5Config: /usr/lib/cmake/KF5Config/KF5ConfigConfig.cmake (found version "5.50.0")
-- Found KF5ConfigWidgets: /usr/lib/cmake/KF5ConfigWidgets/KF5ConfigWidgetsConfig.cmake (found version "5.50.0")
-- Found KF5CoreAddons: /usr/lib/cmake/KF5CoreAddons/KF5CoreAddonsConfig.cmake (found version "5.50.0")
-- Found KF5DBusAddons: /usr/lib/cmake/KF5DBusAddons/KF5DBusAddonsConfig.cmake (found version "5.50.0")
-- Found KF5DocTools: /usr/lib/cmake/KF5DocTools/KF5DocToolsConfig.cmake (found version "5.50.0")
-- Found KF5DNSSD: /usr/lib/cmake/KF5DNSSD/KF5DNSSDConfig.cmake (found version "5.50.0")
-- Found KF5IconThemes: /usr/lib/cmake/KF5IconThemes/KF5IconThemesConfig.cmake (found version "5.50.0")
-- Found Gettext: /usr/bin/msgmerge (found version "0.19.8.1")
-- Found KF5I18n: /usr/lib/cmake/KF5I18n/KF5I18nConfig.cmake (found version "5.50.0")
-- Found KF5KIO: /usr/lib/cmake/KF5KIO/KF5KIOConfig.cmake (found version "5.50.0")
-- Found KF5Solid: /usr/lib/cmake/KF5Solid/KF5SolidConfig.cmake (found version "5.50.0")
-- Found KF5Bookmarks: /usr/lib/cmake/KF5Bookmarks/KF5BookmarksConfig.cmake (found version "5.50.0")
-- Found KF5GuiAddons: /usr/lib/cmake/KF5GuiAddons/KF5GuiAddonsConfig.cmake (found version "5.50.0")
-- Found KF5: success (found suitable version "5.50.0", minimum required is "5.40.0") found components:  Archive Config ConfigWidgets CoreAddons DBusAddons DocTools DNSSD IconThemes I18n KIO Solid Bookmarks GuiAddons
-- Looking for __GLIBC__
-- Looking for __GLIBC__ - found
-- Performing Test _OFFT_IS_64BIT
-- Performing Test _OFFT_IS_64BIT - Failed
-- Performing Test HAVE_DATE_TIME
-- Performing Test HAVE_DATE_TIME - Success
-- Found LibSSH: /usr/lib/libssh.so (found suitable version "0.8.4", minimum required is "0.6.0")
-- Performing Test OFFT_IS_64BIT
-- Performing Test OFFT_IS_64BIT - Success
-- Found Gperf: /usr/bin/gperf 
-- Found KF5Activities: /usr/lib/cmake/KF5Activities/KF5ActivitiesConfig.cmake (found version "5.50.0")
-- Found KF5: success (found version "5.50.0") found components:  KIO I18n Activities
-- Found KF5: success (found version "5.50.0") found components:  KIO Activities
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found SharedMimeInfo: /usr/bin/update-mime-database (found version "1.10")
-- Looking for include file termios.h
-- Looking for include file termios.h - found
-- Looking for include file util.h
-- Looking for include file util.h - not found
-- Looking for include file sys/ioctl.h
-- Looking for include file sys/ioctl.h - found
-- Looking for include file pty.h
-- Looking for include file pty.h - found
-- Looking for include files sys/types.h, libutil.h
-- Looking for include files sys/types.h, libutil.h - not found
-- Looking for getpt
-- Looking for getpt - found
-- Looking for grantpt
-- Looking for grantpt - found
-- Looking for openpty in util
-- Looking for openpty in util - found
-- Looking for isastream in util
-- Looking for isastream in util - found
-- Looking for include file rpc/rpc.h
-- Looking for include file rpc/rpc.h - found
-- Looking for xdr_u_int64_t
-- Looking for xdr_u_int64_t - not found
-- Looking for xdr_uint64_t
-- Looking for xdr_uint64_t - not found
-- Looking for xdr_u_hyper
-- Looking for xdr_u_hyper - not found
-- Looking for xdr_u_longlong_t
-- Looking for xdr_u_longlong_t - not found
CMake Error at nfs/CMakeLists.txt:10 (message):
  Could not find 64-bit XDR datatype functions!


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build/CMakeFiles/CMakeError.log".
 * ERROR: kde-apps/kio-extras-18.04.3-r1::gentoo failed (configure phase):
 *   cmake failed
 *
 * Call stack:
 *     ebuild.sh, line  124:  Called src_configure
 *   environment, line 3814:  Called kde5_src_configure
 *   environment, line 2848:  Called cmake-utils_src_configure
 *   environment, line 1300:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 *
 * If you need support, post the output of `emerge --info '=kde-apps/kio-extras-18.04.3-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=kde-apps/kio-extras-18.04.3-r1::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3_build'
 * S: '/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/work/kio-extras-18.04.3'

>>> Failed to emerge kde-apps/kio-extras-18.04.3-r1, Log file:

>>>  '/var/tmp/portage/kde-apps/kio-extras-18.04.3-r1/temp/build.log'

kmubox ~ # emerge --info
Portage 2.3.51 (python 3.6.5-final-0, default/linux/x86/17.0/desktop/plasma, gcc-7.3.0, glibc-2.27-r6, 4.9.76-gentoo-r1 i686)
=================================================================
System uname: Linux-4.9.76-gentoo-r1-i686-Intel-R-_Celeron-R-_CPU_G1610T_@_2.30GHz-with-gentoo-2.6
KiB Swap:    4194300 total,   3997772 free
Timestamp of repository gentoo: Sun, 25 Nov 2018 13:30:01 +0000
Head commit of repository gentoo: 41b425295ec5d50e14fed6668f7f3d077f3d0d54
sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.24.3-r1::gentoo
dev-lang/python:          2.7.15::gentoo, 3.5.4-r1::gentoo, 3.6.5::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.38.3::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo, 2.30-r4::gentoo
sys-devel/gcc:            6.4.0::gentoo, 7.3.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.27-r6::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts:

gertronix-desk
    location: /root/gentoo/portage
    masters: gentoo
    priority: 1

kmuBOX
    location: /opt/kbx-d/kmubox/devel/umbrello/gentoo/portage
    masters: gentoo
    priority: 1

ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe -fomit-frame-pointer -mtune=generic"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xorg.conf.d /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe -fomit-frame-pointer -mtune=generic"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=i686 -pipe"
GENTOO_MIRRORS="http://de-mirror.org/distro/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://lug.mtu.edu/gentoo/ "
LANG="de_DE.UTF-8"
LC_ALL="de_DE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="3dfx X a52 aac acl acpi activities alsa arts berkdb bluetooth branding bzip2 cairo cdda cdr cips cli consolekit crypt cups cxx dbus declarative dri dts dvd dvdnav dvdr emboss encode exif fam flac fortran gdbm gif glamor gpm gtk hbci iconv ipv6 jpeg kde kipi kwallet lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg mysql ncurses nls nptl ogg opengl openmp pam pango pcre pdf phonon plasma png policykit ppds pulseaudio qml qt5 readline sdl seccomp semantic-desktop sound spell sql ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb v4l v4l2 vim-syntax vorbis webkit widgets wxwidgets x264 x86 xattr xcb xcomposite xml xv xvid zlib" ABI_X86="32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" CAMERAS="canon ptp2 all" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="de" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby23 ruby24" USERLAND="GNU" VIDEO_CARDS="intel i915 i965 radeon r600 fbdev vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Andreas Sturmlechner gentoo-dev 2018-11-27 22:00:08 UTC 
> CMake Error at nfs/CMakeLists.txt:10 (message)
^ that it even goes into nfs subdir is very strange, especially since you have glibc-2.27 installed. Actually what should happen is cmake skip over your dir after rpc/rpc.h NOT found, but for some reason it is.

Please attach the output of `equery f libtirpc`.
Please list `ls -l /usr/include/rpc`.
Do you have a local installation of libtirpc?
Comment 2 Robby Klehm 2018-11-28 07:54:24 UTC 
Thanks for the reply. The issue is solved and is no bug at all. I found files from earlier sys-libs/glibc that are not provided with the current glibc-2.27 anymore:

gaz ~ # qlist sys-libs/glibc-2.25-r9 | grep 'rpc/'
/usr/include/rpc/rpc_msg.h
/usr/include/rpc/netdb.h (this is the only file still installed with glibc-2.27)
/usr/include/rpc/svc.h
/usr/include/rpc/pmap_rmt.h
/usr/include/rpc/rpc_des.h
/usr/include/rpc/key_prot.h
/usr/include/rpc/xdr.h
/usr/include/rpc/auth_des.h
/usr/include/rpc/pmap_clnt.h
/usr/include/rpc/types.h
/usr/include/rpc/pmap_prot.h
/usr/include/rpc/auth.h
/usr/include/rpc/auth_unix.h
/usr/include/rpc/clnt.h
/usr/include/rpc/des_crypt.h
/usr/include/rpc/rpc.h
/usr/include/rpc/svc_auth.h

I removed then these files after checking that they are not provided by another package (qfile /usr/include/rpc/*) and was then able to emerge -avO kde-apps/kio-extras and can proceed with @world.

This all is caused by an own mistake. I unmerged sys-libs/glibc-2.25-r9 (was blocked) and in order to rescue this system I packed all sys-libs/glibc-2.25-r9 files from another installation and put them manually back. So they were not deleted when glibc-2.27 was merged. Sorry, please close this issue and thanks again.
Comment 3 Andreas Sturmlechner gentoo-dev 2018-11-28 11:40:43 UTC 
Thanks for checking back, so it was just as I expected.

On a semi-related note, bringing kio_nfs back properly is currently being worked on: https://phabricator.kde.org/D17205