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Bug 664860

Summary: sci-libs/netcdf-4.4.1.1: run_tests.sh fails with SIGBUS
Product: Gentoo Linux Reporter: Rolf Eike Beer <eike>
Component: Current packagesAssignee: Gentoo Science Related Packages <sci>
Status: RESOLVED FIXED    
Severity: normal CC: jstein
Priority: Normal Keywords: TESTFAILURE
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 371525    
Attachments: build.log

Description Rolf Eike Beer archtester 2018-08-29 20:43:14 UTC
Created attachment 545480 [details]
build.log

*** Testing ncgen.
*** creating classic file c0.nc from c0.cdl...
*** generating c0.nc ***
*** comparing c0.nc against ./c0.cdl *** 
*** creating 64-bit offset file c0_64.nc from c0.cdl...
*** generating c0.nc ***
*** comparing c0.nc against ./c0.cdl *** 
*** creating 64-bit offset file c5.nc from c5.cdl...
./run_tests.sh: line 36: 57072 Bus error               ./ncgen -k 64-bit-data -b -o c5.nc $srcdir/c5.cdl
FAIL run_tests.sh (exit status: 138)


Portage 2.3.40 (python 3.5.5-final-0, default/linux/sparc/13.0, gcc-7.3.0, glibc-2.26-r7, 4.16.8 sparc64)
=================================================================
System uname: Linux-4.16.8-sparc64-sun4v-with-gentoo-2.4.1
KiB Mem:    33133328 total,  12797904 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Wed, 29 Aug 2018 00:04:34 +0000
Head commit of repository gentoo: 7ad7fb48503e4fc2fdcd02ec86f8874ae64c8b4b

sh bash 4.4_p12
ld GNU ld (Gentoo 2.30 p2) 2.30.0
app-shells/bash:          4.4_p12::gentoo
dev-lang/perl:            5.26.2::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.5.5::gentoo, 3.6.5::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.34.11::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo
sys-devel/binutils:       2.30-r2::gentoo
sys-devel/gcc:            7.3.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.26-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/repo/sync/gentoo.git
    priority: -1000
    sync-git-verify-commit-signature: yes

qt
    location: /var/lib/layman/qt
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="sparc ~sparc"
ACCEPT_LICENSE="* -@EULA"
CBUILD="sparc-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=niagara2 -pipe -Wcast-align"
CHOST="sparc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/qmail/alias /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -mcpu=niagara2 -pipe -Wcast-align"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS=""
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS=""
GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j20"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl berkdb big-endian bzip2 cli crypt cxx dri fortran gdbm iconv ipv6 libtirpc modules ncurses nls nptl openmp pam pcre readline sparc ssl tcpd unicode xattr zlib" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby23" USERLAND="GNU" VIDEO_CARDS="fbdev glint mga r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Matt Turner gentoo-dev 2019-09-14 06:52:45 UTC
I dropped the affected versions from the tree. The remaining versions pass their test suites on sparc (with USE=-dap at least).