Bug 664506 – sci-chemistry/openbabel-python-2.4.1-r1 : CMake Error at cmake/.../MacroEnsureVersion.cmake:76 (MATH):

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2018-08-24 17:53:40 UTC]

-- Check size of clock_t
-- Check size of clock_t - done
CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH):
  MATH cannot parse the expression: "x86_648*10000 + x86_642*100 + x86_640":
  syntax error, unexpected exp_NUMBER, expecting $end (8)
Call Stack (most recent call first):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop_libressl_20180820-195837

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby23 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.8.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpv sci-chemistry/openbabel-python
[ebuild  N    ] sci-chemistry/openbabel-python-2.4.1-r1  PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5"

[Comment 1 Toralf Förster 2018-08-24 17:53:43 UTC]

Created attachment 544848 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2018-08-24 17:53:45 UTC]

Created attachment 544850 [details]
CMakeError.log

[Comment 3 Toralf Förster 2018-08-24 17:53:48 UTC]

Created attachment 544852 [details]
CMakeOutput.log

[Comment 4 Toralf Förster 2018-08-24 17:53:51 UTC]

Created attachment 544854 [details]
emerge-history.txt

[Comment 5 Toralf Förster 2018-08-24 17:53:53 UTC]

Created attachment 544856 [details]
environment

[Comment 6 Toralf Förster 2018-08-24 17:53:56 UTC]

Created attachment 544858 [details]
etc.portage.tbz2

[Comment 7 Toralf Förster 2018-08-24 17:53:58 UTC]

Created attachment 544860 [details]
logs.tbz2

[Comment 8 Toralf Förster 2018-08-24 17:54:01 UTC]

Created attachment 544862 [details]
sci-chemistry:openbabel-python-2.4.1-r1:20180824-175001.log

[Comment 9 Toralf Förster 2018-08-24 17:54:04 UTC]

Created attachment 544864 [details]
temp.tbz2

[Comment 10 Attila Tóth 2019-01-17 00:55:21 UTC]

Created attachment 561682 [details, diff]
openbabel-perl-2.3.2-gcc-8_and_9.patch

Continue the path paved by the previous gcc-6_and_7 patch. Works for me.

[Comment 11 Arkadiusz Bokowy 2019-09-03 19:28:40 UTC]

(In reply to Attila Tóth from comment #10)
> Created attachment 561682 [details, diff] [details, diff]
> openbabel-perl-2.3.2-gcc-8_and_9.patch
> 
> Continue the path paved by the previous gcc-6_and_7 patch. Works for me.

+1 This patch has worked for me as well. Please, add it to portage.

[Comment 12 David Seifert 2020-02-09 10:54:58 UTC]

*** Bug 682484 has been marked as a duplicate of this bug. ***

[Comment 13 Larry the Git Cow 2020-02-09 10:57:03 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a52d2f5b6f39eb7cb7ab5e833981d5e872fc79e1

commit a52d2f5b6f39eb7cb7ab5e833981d5e872fc79e1
Author:     David Seifert <[e-mail]>
AuthorDate: 2020-02-09 10:56:45 +0000
Commit:     David Seifert <[e-mail]>
CommitDate: 2020-02-09 10:56:45 +0000

    sci-chemistry/openbabel-python: Fix broken GCC version detection
    
    Closes: https://bugs.gentoo.org/664506
    Package-Manager: Portage-2.3.87, Repoman-2.3.20
    Signed-off-by: David Seifert <[e-mail]>

 .../files/openbabel-python-2.3.2-gcc-6_and_7-backport.patch             | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)