Bug 660610 – dev-python/sqlalchemy-1.2.7 fails tests (missing pymysql dep)

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Jonathan Lovelace 2018-07-07 18:20:14 UTC]

Created attachment 538712 [details]
dev-python:sqlalchemy-1.2.7:20180707-180744.log

=dev-python/sqlalchemy-1.2.7 fails its test phase, specifically the test test/perf/invalidate_stresstest.py, with an "ImportError: No module named pymysql"

emerge --info:
Portage 2.3.40 (python 3.5.5-final-0, hardened/linux/amd64, gcc-7.3.0, glibc-2.25-r11, 4.14.8-gentoo-r1 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.14.8-gentoo-r1-x86_64-Intel-R-_Core-TM-_i5-2400_CPU_@_3.10GHz-with-gentoo-2.4.1
KiB Mem:     8071020 total,   6461080 free
KiB Swap:   13029364 total,  12802160 free
Timestamp of repository gentoo: Fri, 06 Jul 2018 22:15:01 +0000
Head commit of repository gentoo: 17cbbe79b97bbfa1a6d20aeffb62619d6f1cdbb3
Head commit of repository eclipse: 80b6b0802f9f65864a7064d7e0812154720423f4

sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.24.3-r1::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.5.5::gentoo, 3.6.5::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.34.11::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo
sys-devel/gcc:            7.3.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r11::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://myrriddium.local/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: yes

eclipse
    location: /var/lib/layman/eclipse-overlay
    sync-type: git
    sync-uri: git://github.com/gentoo/eclipse-overlay.git
    masters: gentoo

localoverlay
    location: /usr/local/portage
    masters: gentoo lovelace eclipse
    priority: 0

dlang
    location: /var/lib/layman/dlang
    sync-type: laymansync
    sync-uri: https://github.com/gentoo/dlang.git
    masters: gentoo
    priority: 50

lovelace
    location: /var/lib/layman/lovelace
    sync-type: laymansync
    sync-uri: https://github.com/kingjon3377/lovelace-overlay.git
    masters: gentoo
    priority: 50

steam-overlay
    location: /var/lib/layman/steam-overlay
    sync-type: laymansync
    sync-uri: https://github.com/anyc/steam-overlay.git
    masters: gentoo
    priority: 50

Installed sets: @archivers, @backup-options, @devel, @dicts, @doc-conv, @docs, @emulation, @fonts, @kernels, @looked-interesting, @maintenance, @ocr, @office, @sp-devel
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=core2 -mtune=generic -fno-unwind-tables -fno-asynchronous-unwind-tables -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.1/conf /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=core2 -mtune=generic -fno-unwind-tables -fno-asynchronous-unwind-tables -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps y --autounmask-keep-masks --backtrack=1000 --verbose-conflicts"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=core2 -mtune=generic -fno-unwind-tables -fno-asynchronous-unwind-tables -fomit-frame-pointer"
FEATURES="assume-digests binpkg-logs candy collision-protect config-protect-if-modified distlocks ebuild-locks fakeroot fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict strict-keepdir test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync webrsync-gpg xattr"
FFLAGS="-O2 -pipe -march=core2 -mtune=generic -fno-unwind-tables -fno-asynchronous-unwind-tables -fomit-frame-pointer"
GENTOO_MIRRORS="http://lug.mtu.edu/gentoo/ http://gentoo.osuosl.org/ http://gentoo.cites.uiuc.edu/pub/gentoo/ http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_US"
MAKEOPTS="-j3 -l5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acpi alsa amd64 bash-completion berkdb bzip2 cddb cli crypt cxx dri gdbm gnat_2017 hardened iconv ipv6 java java5 java6 jpeg libnotify libsecret libtirpc lm_sensors mmx mmxext modules multilib ncurses nls nptl ogg openmp pam pcre pic pie png readline seccomp sse sse2 sse3 sse4_1 sse4_2 ssl ssp ssse3 startup-notification tcpd theora truetype unicode urandom vorbis xattr xcomposite xdg xft xtpax xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="sheets words plan kexi braindump flow" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev libinput" KERNEL="linux" L10N="en en_US en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="pdfimport" NETBEANS_MODULES="harness ide java nb javafx profile" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby23" USERLAND="GNU" VIDEO_CARDS="intel fbdev i915" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Michał Górny 2018-07-13 20:12:32 UTC]

This is definitely weird.  I don't have pymysql on any of my systems, and I don't have this error.  I suspect it's one of pytest plugins going rogue and breaking stuff.  Could you try removing them one by one to find the culprit?

Also, please try 1.2.9 but I suspect it'll fail just the same.

[Comment 2 Michał Górny 2020-03-29 09:18:02 UTC]

Old version removed.  Please reopen if you can reproduce still.