Summary: | revdep-rebuild fails finding broken references to `libgfortan.so.4` | ||
---|---|---|---|
Product: | Portage Development | Reporter: | Niklas Haas <gentoo> |
Component: | Tools | Assignee: | Portage Tools Team <tools-portage> |
Status: | UNCONFIRMED --- | ||
Severity: | normal | CC: | dan |
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- |
Description
Niklas Haas
2018-05-19 20:32:45 UTC
I had a similar problem when upgrading to the new stable gcc-7.3.0-r3 from gcc-6.4: The new "revdep-rebuild" (python-version) reported that my system is consistent. After using R-3.4.1 (current stable version), a broken reference showed up: "libgfortan.so.3" After recompiling R, the problem was gone. I immediatly issued the legacy "revdep-rebuild.sh" (shell-version) which found additional broken packages: sys-cluster/openmpi-2.0.2 ci-libs/blas-reference-20070226-r4 sci-libs/lapack-reference-3.2.1-r4 The rebuilds were successful. ```emerge --info Portage 2.3.40 (python 3.4.8-final-0, default/linux/amd64/17.0/desktop/gnome/systemd, gcc-7.3.0, glibc-2.26-r7, 4.14.52-gentoo x86_64) ================================================================= System uname: Linux-4.14.52-gentoo-x86_64-Intel-R-_Core-TM-_i5-3570K_CPU_@_3.40GHz-with-gentoo-2.4.1 KiB Swap: 20479996 total, 20453644 free Timestamp of repository gentoo: Tue, 10 Jul 2018 13:00:01 +0000 Head commit of repository gentoo: c9b3acfe37ba4c772c1671a36ace6de6c2e17651 sh bash 4.4_p12 ld GNU ld (Gentoo 2.30 p2) 2.30.0 distcc 3.2rc1 x86_64-pc-linux-gnu [enabled] app-shells/bash: 4.4_p12::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.24.3-r1::gentoo dev-lang/python: 2.7.14-r1::gentoo, 3.4.8::gentoo, 3.5.5::gentoo, 3.6.5::gentoo dev-util/cmake: 3.9.6::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.4.1-r2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.15.1-r2::gentoo sys-devel/binutils: 2.30-r2::gentoo sys-devel/gcc: 7.3.0-r3::gentoo sys-devel/gcc-config: 1.8-r1::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1::gentoo sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers) sys-libs/glibc: 2.26-r7::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes lokal location: /usr/local/portage masters: gentoo priority: 0 dotnet location: /var/lib/layman/dotnet masters: gentoo priority: 50 dr location: /var/lib/layman/dr masters: gentoo priority: 50 koo location: /var/lib/layman/koo masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core-avx-i -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.0/ext-active/ /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core-avx-i -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distcc distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="ftp://mirror.netcologne.de/gentoo/ ftp://ftp.uni-erlangen.de/pub/mirrors/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://gentoo.imj.fr/pub/gentoo/ http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/" LANG="de_DE.UTF-8" LC_ALL="de_DE.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 amdgpu autoipd avahi bash-completion berkdb branding bzip2 cairo cdda cli clock collada colord crypt cups cxx cycles dbus dri drm dts dvd dvdr eds egl emboss encode evo exif fam ffmpeg flac fortran gbm gcrypt gdbm gflags gif git glamor gles gnome gnome-keyring gnome-online-accounts gnutls gpm gstreamer gtk gtk3 iconv icu introspection ipv6 jack jit jpeg kdrive ladpsa lcms ldap libkms libnotify libsecret libtirpc mad mmx mng modemmanager modules mp3 mp4 mpeg multilib nautilus ncurses netcdf nls nptl ogg openal opencl opengl openmp pam pango pch pcre pdf perl pie png policykit ppds pulseaudio python readline sdl seccomp sndfile spell sqlite sse sse2 ssl ssse3 startup-notification subversion svg symlink systemd taglib tcpd theora tiff truetype udev udisks unicode upower usb uxa vaapi vala virt-network visualizer vorbis vulkan winbind wxwidgets x264 xa xattr xcb xml xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="de" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_4 python3_5" RUBY_TARGETS="ruby23" SANE_BACKENDS="mustek mustek_pp mustek_usb mustek_usb2 plustek plustek_pp" USERLAND="GNU" VIDEO_CARDS="intel i965 amdgpu radeonsi radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ``` |