Bug 647340

Summary:	sci-biology/allpathslg-52488-r2 : /.../ld: cannot find -lieee
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:	~arch only
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	637144
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-biology:allpathslg-52488-r2:20180211-194551.log temp.tbz2

Description Toralf Förster gentoo-dev

2018-02-11 20:49:07 UTC

libtool: link: x86_64-pc-linux-gnu-g++ -pthread -fopenmp -O2 -pipe -march=native -std=c++11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -Wno-unused-parameter -mieee-fp -fno-strict-aliasing -iquote . -DNDEBUG -Wl,-O1 -o RemodelGaps RemodelGaps.o  -Wl,--as-needed libAllPathsLG.a -fopenmp -pthread
/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lieee
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:2252: RemodelGaps] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/allpathslg-52488-r2/work/allpathslg-52488/src'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-no-multilib-hardened_20180207-191057

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.0 *

Available Python interpreters, in order of preference:
  [1]   python3.5
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems)
  [2]   ruby23 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.6.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpv sci-biology/allpathslg

Comment 1 Toralf Förster gentoo-dev

2018-02-11 20:49:10 UTC

Created attachment 519128 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2018-02-11 20:49:13 UTC

Created attachment 519130 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2018-02-11 20:49:16 UTC

Created attachment 519132 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2018-02-11 20:49:19 UTC

Created attachment 519134 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2018-02-11 20:49:22 UTC

Created attachment 519136 [details]
logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2018-02-11 20:49:25 UTC

Created attachment 519138 [details]
sci-biology:allpathslg-52488-r2:20180211-194551.log

Comment 7 Toralf Förster gentoo-dev

2018-02-11 20:49:28 UTC

Created attachment 519140 [details]
temp.tbz2

Comment 8 Larry the Git Cow gentoo-dev

2018-10-21 15:17:36 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=edca5a71f730e3c24b0704faeccb1b879c23e2be

commit edca5a71f730e3c24b0704faeccb1b879c23e2be
Author:     Pacho Ramos <pacho@gentoo.org>
AuthorDate: 2018-10-21 15:05:09 +0000
Commit:     Pacho Ramos <pacho@gentoo.org>
CommitDate: 2018-10-21 15:17:26 +0000

    sci-biology/allpathslg: Fix build with glibc-2.27
    
    Closes: https://bugs.gentoo.org/647340
    Signed-off-by: Pacho Ramos <pacho@gentoo.org>
    Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-biology/allpathslg/allpathslg-52488-r2.ebuild | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)