Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!

Bug 646986

Summary: sci-biology/pysam: Run test suite in src_test()
Product: Gentoo Linux Reporter: David Seifert <soap>
Component: Current packagesAssignee: Horea Christian <gentoo>
Status: RESOLVED FIXED    
Severity: normal CC: sci-biology
Priority: Normal Keywords: PullRequest
Version: unspecified   
Hardware: All   
OS: Linux   
See Also: https://github.com/gentoo/gentoo/pull/16982
Whiteboard:
Package list:
Runtime testing required: ---

Description David Seifert gentoo-dev 2018-02-08 11:22:26 UTC
Currently, sci-biology/pysam is a no-op in src_test() currently. We want the full pysam test suite to be run, in order to make automatic adding of new python impls a reality.
Comment 1 Larry the Git Cow gentoo-dev 2020-08-03 16:56:03 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=98949b9dddb793b4f2834beb4888df6204322699

commit 98949b9dddb793b4f2834beb4888df6204322699
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-08-03 16:54:29 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-08-03 16:54:29 +0000

    sci-biology/pysam: Bump to 0.16.0.1
    
    Bug: https://bugs.gentoo.org/645060
    Bug: https://bugs.gentoo.org/646986
    Bug: https://bugs.gentoo.org/718472
    Package-Manager: Portage-3.0.1, Repoman-2.3.23
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 +
 .../pysam/files/pysam-0.16.0.1-fix-tests.patch     | 37 +++++++++++++
 sci-biology/pysam/pysam-0.16.0.1.ebuild            | 60 ++++++++++++++++++++++
 3 files changed, 98 insertions(+)
Comment 2 Larry the Git Cow gentoo-dev 2020-08-03 21:11:47 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ebcdc8895b15d89af6600d8241e5cda417a4f7e3

commit ebcdc8895b15d89af6600d8241e5cda417a4f7e3
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-08-03 21:11:13 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-08-03 21:11:13 +0000

    sci-biology/pysam: Remove old
    
    Closes: https://bugs.gentoo.org/645060
    Closes: https://bugs.gentoo.org/646986
    Closes: https://bugs.gentoo.org/718472
    Package-Manager: Portage-3.0.1, Repoman-2.3.23
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 -
 .../pysam/files/pysam-0.12-fix-buildsystem.patch   | 63 ----------------------
 sci-biology/pysam/pysam-0.12.0.1.ebuild            | 47 ----------------
 3 files changed, 111 deletions(-)