Bug 643778 – dev-libs/libxml2-2.9.7 - /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld -m32: skipping incompatible /usr/lib64/libdl.so when searching for -ldl

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Alexey Skobkin 2018-01-07 13:28:15 UTC]

Created attachment 513636 [details]
build.log.gz

After changing profile from 13 to 17.1 version I encountered the problem when rebuilding dev-libs/libxml2-2.9.7.

# emerge --info
Unavailable repository 'calculate' referenced by masters entry in '/var/lib/layman/rasdark/metadata/layout.conf'
Portage 2.3.19 (python 3.4.6-final-0, default/linux/amd64/17.1/desktop/gnome/systemd, gcc-7.2.0, glibc-2.26-r5, 4.14.7-gentoo-skobkin x86_64)
=================================================================
System uname: Linux-4.14.7-gentoo-skobkin-x86_64-AMD_Ryzen_Threadripper_1950X_16-Core_Processor-with-gentoo-2.4.1
KiB Mem:    32880840 total,  23646432 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 07 Jan 2018 09:13:39 +0000
Head commit of repository gentoo: e084c5b768eea7bd287af8ea7ceaeb273bc94509

Head commit of repository tox-overlay: 8037d84a8fa2f8179a147f7d20276763ed3540d2

sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
ccache version 3.3.4 [disabled]
app-shells/bash:          4.4_p12::gentoo
dev-lang/perl:            5.26.1-r1::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.4.6-r1::gentoo, 3.5.4-r1::gentoo
dev-util/ccache:          3.3.4-r1::gentoo
dev-util/cmake:           3.10.1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/sandbox:         2.12::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r1::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo
sys-devel/gcc:            6.4.0-r1::gentoo, 7.2.0-r1::gentoo
sys-devel/gcc-config:     1.9.1::gentoo
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1-r1::gentoo
sys-kernel/linux-headers: 4.14::gentoo (virtual/os-headers)
sys-libs/glibc:           2.26-r5::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000

jorgicio
    location: /var/lib/layman/jorgicio
    masters: gentoo
    priority: 50

lmiphay
    location: /var/lib/layman/lmiphay
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/user/lmiphay.git
    masters: gentoo
    priority: 50

mva 
    location: /var/lib/layman/mva
    sync-type: laymansync
    sync-uri: https://github.com/msva/mva-overlay
    masters: gentoo
    priority: 50

obs-studio-overlay
    location: /var/lib/layman/obs-studio-overlay
    masters: gentoo
    priority: 50

rasdark
    location: /var/lib/layman/rasdark
    sync-type: laymansync
    sync-uri: https://github.com/rasdark/overlay
    masters: gentoo
    priority: 50

rion
    location: /var/lib/layman/rion
    sync-type: laymansync
    sync-uri: https://github.com/rion-overlay/rion-overlay.git
    masters: gentoo
    priority: 50

steam-overlay
    location: /var/lib/layman/steam-overlay
    masters: gentoo
    priority: 50

tox-overlay
    location: /var/lib/layman/tox-overlay
    sync-type: git
    sync-uri: git://github.com/Tox/gentoo-overlay-tox.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O3 -pipe -march=x86-64 -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/chromium/policies/managed/chrome-gnome-shell.json /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/opt/chrome/policies/managed/chrome-gnome-shell.json /etc/php/apache2-php7.1/ext-active/ /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O3 -pipe -march=x86-64 -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs cgroup compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync metadata-transfer multilib-strict news nodoc parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.yandex.ru/gentoo-distfiles/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j32"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"  
PORTAGE_TMPDIR="/tmp"
USE="X a52 aac acl acpi amd64 avx bash-completion bluetooth branding bzip2 cairo cdr cli colord cracklib crypt cups curl curlwrappers cxx dbus dga djvu dri dts dv dvd dvdr eds emboss encode evo exif fam fbcon ffmpeg firefox flac fortran gif git glamor gnome gnome-keyring gnome-online-accounts gnutls gpm gstreamer gtk gtk3 gzip hddtemp iconv idn imagemagick inotify introspection ipv6 jabber jit jpeg lame lcms libass libnotify libsecret lm_sensors lzma lzo mad matroska mhash mime mmap mmx mmxext mng modemmanager modules mp3 mp4 mpeg mplayer multilib nautilus ncurses networkmanager nls nptl ogg opengl openmp pam pango pch pcre pdf plasma png policykit posix ppds pulseaudio qt3support qt5 raw readline samba sasl sdl seccomp session sharedmem smp sockets sound spell sse sse2 sse3 sse4_1 ssl ssse3 startup-notification svg syslog systemd taglib tcmalloc tcpd theora threads tiff tracker truetype udev udisks unicode upnp upnp-av upower usb v4l vhosts videos vnc vorbis wayland wxwidgets x264 x265 xattr xcb xcomposite xft xinerama xml xmpp xv xvid xvmc zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" ENLIGHTENMENT_MODULES="conf conf-window-manipulation conf-window-remembers" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-1 php7-2" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4 python3_5" QEMU_SOFTMMU_TARGETS="x86_64" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="ruby23 ruby25" USERLAND="GNU" VIDEO_CARDS="nvidia nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Alexey Skobkin 2018-01-07 13:44:50 UTC]

Uh. Probably it can be caused by enabled PIE:
https://www.gentoo.org/support/news-items/2017-11-30-new-17-profiles.html

I'll try to rebuild GCC, binutils, glibc and then rebuild the world and then recheck this problem again.

[Comment 2 Alexey Skobkin 2018-01-07 20:00:15 UTC]

Can't determine yet. On 17.1 profile dev-lang/gcc also has problems with rebuilding. But if I'm switching back to 13.0 profile then package build successfully.

[Comment 3 Sam James 2022-01-20 15:08:56 UTC]

Please tell us if this is still an issue.