Bug 636096 – dev-lang/python-2.7.12 fails to build with glibc-2.25 and linux 3.10 due to missing getrandom() syscall

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Vadim 2017-10-31 18:03:26 UTC]

Created attachment 501432 [details]
Build log

I try to rebuild package =dev-lang/python-2.7.12 and get the issue:
Python build finished, but the necessary bits to build these modules were not found:
_tkinter           bsddb185           dl              
imageop            sunaudiodev                        
To find the necessary bits, look in setup.py in detect_modules() for the module's name.


Failed to build these modules:
_multiprocessing                                      

running build_scripts
creating build/scripts-2.7
copying and adjusting /var/tmp/portage/dev-lang/python-2.7.12/work/Python-2.7.12/Tools/scripts/pydoc -> build/scripts-2.7
copying and adjusting /var/tmp/portage/dev-lang/python-2.7.12/work/Python-2.7.12/Tools/scripts/idle -> build/scripts-2.7
copying and adjusting /var/tmp/portage/dev-lang/python-2.7.12/work/Python-2.7.12/Tools/scripts/2to3 -> build/scripts-2.7
copying and adjusting /var/tmp/portage/dev-lang/python-2.7.12/work/Python-2.7.12/Lib/smtpd.py -> build/scripts-2.7
changing mode of build/scripts-2.7/pydoc from 644 to 755
changing mode of build/scripts-2.7/idle from 644 to 755
changing mode of build/scripts-2.7/2to3 from 644 to 755
changing mode of build/scripts-2.7/smtpd.py from 644 to 755
Makefile:560: recipe for target 'sharedmods' failed
make: *** [sharedmods] Error 1
 * ERROR: dev-lang/python-2.7.12::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=dev-lang/python-2.7.12::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=dev-lang/python-2.7.12::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/dev-lang/python-2.7.12/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-lang/python-2.7.12/temp/environment'.
 * Working directory: '/var/tmp/portage/dev-lang/python-2.7.12/work/x86_64-pc-linux-gnu'
 * S: '/var/tmp/portage/dev-lang/python-2.7.12/work/Python-2.7.12'

>>> Failed to emerge dev-lang/python-2.7.12, Log file:

>>>  '/var/tmp/portage/dev-lang/python-2.7.12/temp/build.log'



EMERGE INFO:

emerge --info
!!! Found 2 make.conf files, using both '/etc/make.conf' and '/etc/portage/make.conf'
Portage 2.3.8 (python 2.7.12-final-0, hardened/linux/amd64, gcc-4.9.4, glibc-2.25-r8, 3.10.104-gentoo-r1 x86_64)
=================================================================
System uname: Linux-3.10.104-gentoo-r1-x86_64-Intel-R-_Xeon-R-_CPU_E5-1650_v2_@_3.50GHz-with-gentoo-2.4.1
KiB Mem:   132075808 total,  19881016 free
KiB Swap:    4192188 total,   3777388 free
Timestamp of repository gentoo: Tue, 31 Oct 2017 16:00:01 +0000
Head commit of repository gentoo: 523b4f6e2ce72da0183fd3117f71eff1a265ea66
sh bash 4.3_p48-r1
ld GNU ld (Gentoo 2.28.1 p1.0) 2.28.1
app-shells/bash:          4.3_p48-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.3::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.6.3::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.22.4::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.11.3::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.28.1::gentoo
sys-devel/gcc:            4.9.4::gentoo, 5.4.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.0-r1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r8::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: --password-file=/etc/rsync.secrets

CGI
    location: /usr/local/portage/gentoo-overlay
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-mtune=generic -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-mtune=generic -O2 -pipe"
DISTDIR="/usr/local/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.ovh.net/gentoo-distfiles ftp://mirror.ovh.net/gentoo-distfiles"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j8"
PKGDIR="/usr/local/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="--password-file=/etc/rsync.secrets"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X509 acl amd64 apache2 bcmath berkdb bzip2 cdb cgi cli cracklib cron crypt ctype curl curlwrappers cxx dri exif fastcgi filter flv fpm ftp gd gdbm geoip gmp gnutls hardened hash iconv imap ipv6 jpeg json justify kerberos ldap lzo mhash mmx modules multilib mysql mysqli mysqlnd nagios-dns nagios-ping nagios-ssh ncurses nls nscd odbc openmp openssl pam pcre pdo pie pkcs11 png readline reflection sasl seccomp securelink session simplexml snmp soap sockets spl sqlite sse sse2 ssl ssp suexec tcpd threads tidy truetype unicode upstream urandom vim-syntax xattr xml xmlreader xmlwriter xtpax zip zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_core authn_dbm authn_file authz_core authz_dbm authz_groupfile authz_host authz_owner authz_user cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias access_compat" APACHE2_MPMS="event" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="csv df interface logfile network rrdtool cpu load memory processes apache nginx mysql write_graphite unixsock" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" NGINX_MODULES_HTTP="access auth_basic autoindex browser charset empty_gif fastcgi geo gzip limit_req limit_zone map memcached proxy referer rewrite split_clients ssi stub_status upstream_ip_hash userid headers_more geoip dynamicetags spdy upstream_check upstream_keepalive metrics naxsi" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby22" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS

[Comment 1 Mike Gilbert 2017-10-31 18:55:43 UTC]

This is an issue with older linux kernels and glibc-2.25.

Upgrade to python-2.7.14 or upgrade your kernel to 3.17 or greater.

[Comment 2 Vadim 2017-11-01 11:19:36 UTC]

Thank you! Kernel rebuilding to the newer version helped.