Bug 631620

Summary:	dev-lang/R-3.4.1 : running code in reg-tests-3.R make[3]: *** [Makefile.common:100: reg-tests-3.Rout] Error 1
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Mathematics related packages <sci-mathematics>
Status:	RESOLVED OBSOLETE
Severity:	normal	CC:	mjo
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt dev-lang:R-3.4.1:20170921-081454.log emerge-history.txt temp.tbz2 logs.tbz2 environment etc.portage.tbz2

Description Toralf Förster gentoo-dev

2017-09-21 08:55:08 UTC

make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests'
make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests'
running code in 'reg-tests-3.R' ...make[3]: *** [Makefile.common:100: reg-tests-3.Rout] Error 1
make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests'
make[2]: *** [Makefile.common:275: test-Reg] Error 2
make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 13.0-desktop_libressl_20170918-162903

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-6.4.0 *

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python3.6 (fallback)
  [3]   python2.7 (fallback)

java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.5.1 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpv dev-lang/R
[ebuild  N    ] dev-lang/R-3.4.1  USE="X cairo icu jpeg nls openmp png readline tiff -doc -java -lapack -minimal -perl (-prefix) -profile -static-libs -tk"

Comment 1 Toralf Förster gentoo-dev

2017-09-21 08:55:12 UTC

Created attachment 495764 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2017-09-21 08:55:15 UTC

Created attachment 495766 [details]
dev-lang:R-3.4.1:20170921-081454.log

Comment 3 Toralf Förster gentoo-dev

2017-09-21 08:55:18 UTC

Created attachment 495768 [details]
emerge-history.txt

Comment 4 Toralf Förster gentoo-dev

2017-09-21 09:14:16 UTC

Created attachment 495770 [details]
temp.tbz2

temp.tbz2

Comment 5 Toralf Förster gentoo-dev

2017-09-21 09:14:29 UTC

Created attachment 495772 [details]
logs.tbz2

logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2017-09-21 09:15:14 UTC

Created attachment 495774 [details]
environment

environment

Comment 7 Toralf Förster gentoo-dev

2017-09-21 09:15:34 UTC

Created attachment 495776 [details]
etc.portage.tbz2

etc.portage.tbz2

Comment 8 Mark Wright gentoo-dev

2018-07-05 04:40:11 UTC

R 3.5.1 passes tests for me (apart from being blocked from accessing the
internet with network-sandbox), including this test:

make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.5.1/work/R-3.5.1/tests'
make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.5.1/work/R-3.5.1/tests'
running code in 'reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
running code in 'reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... OK
  comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.5.1/work/R-3.5.1/tests'