| Summary: | sys-cluster/mpich-3.2-r1 : libhwloc.so: error adding symbols: File in wrong format | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Cluster Team <cluster> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | CC: | cluster, j0inty, mark+gentoobugs, pavanbalaji.work, s.rohmen |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sys-cluster:mpich-3.2-r1:20170903-080536.log temp.tbz2 build.log - sys-cluster/mpich-3.2-r1::gentoo |
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Created attachment 492088 [details]
emerge-info.txt
Created attachment 492090 [details]
emerge-history.txt
Created attachment 492092 [details]
environment
Created attachment 492094 [details]
etc.portage.tbz2
Created attachment 492096 [details]
logs.tbz2
Created attachment 492098 [details]
sys-cluster:mpich-3.2-r1:20170903-080536.log
Created attachment 492100 [details]
temp.tbz2
Hi, same here with the gcc-7.2.0 compiler. [snip] libtool: link: x86_64-pc-linux-gnu-gcc -m32 -march=skylake -O2 -pipe -O0 -g -o hydra_pmi_proxy pm/pmiserv/hydra_pmi_proxy-pmip.o pm/pmiserv/hydra_pmi_proxy-pmip_cb.o pm/pmiserv/hydra_pmi_proxy-pmip_utils.o pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v1.o pm/pmiserv/hydra_pmi_proxy-pmip_pmi_v2.o pm/pmiserv/hydra_pmi_proxy-common.o pm/pmiserv/hydra_pmi_proxy-pmi_v2_common.o -L./../../mpl -L. -L/usr/lib64 -L/usr/lib /var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2-abi_x86_32.x86/src/pm/hydra/.libs/libhydra.a /var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2-abi_x86_32.x86/src/mpl/.libs/libmpl.a -lpthread /usr/lib64/libhwloc.so -lm -lnuma -ludev /usr/lib64/libltdl.so -ldl /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib64/libpthread.so when searching for -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib64/libpthread.a when searching for -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread /usr/lib64/libhwloc.so: error adding symbols: File in wrong format collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1406: hydra_nameserver] Error 1 [/snap] regards j0inty Created attachment 515816 [details]
build.log - sys-cluster/mpich-3.2-r1::gentoo
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/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread /usr/lib64/libhwloc.so: error adding symbols: File in wrong format collect2: error: ld returned 1 exit status make[3]: *** [Makefile:1413: hydra_persist] Error 1 make[3]: Leaving directory '/var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2-abi_x86_32.x86/src/pm/hydra' make[2]: *** [Makefile:1787: all-recursive] Error 1 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 13.0-desktop-gnome_abi32+64_20170828-210916 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-6.4.0 * Available Python interpreters, in order of preference: [1] python3.4 [2] python2.7 (fallback) Available Ruby profiles: [1] ruby22 (with Rubygems) * java-config: The following VMs are available for generation-2: emerge -qpv sys-cluster/mpich [blocks b ] sys-cluster/mpich ("sys-cluster/mpich" is blocking sys-cluster/openmpi-2.1.1) [uninstall ] sys-cluster/openmpi-2.1.1 USE="cxx fortran ipv6 -cma -cuda -heterogeneous -java -mpi-threads -numa -romio -threads" ABI_X86="32 (64) (-x32)" OPENMPI_FABRICS="-knem -ofed -psm" OPENMPI_OFED_FEATURES="-connectx-xrc -control-hdr-padding -dynamic-sl -rdmacm -udcm" OPENMPI_RM="-pbs -slurm" [ebuild N ] sys-cluster/mpich-3.2-r1 USE="cxx fortran -doc -mpi-threads -romio -threads" ABI_X86="32 (64) (-x32)"