Bug 628584

Summary:	dev-db/mongodb-3.4.6 error: undefined reference
Product:	Gentoo Linux	Reporter:	Alexey Skobkin <skobkin-ru>
Component:	Current packages	Assignee:	Lujeni <julien>
Status:	RESOLVED DUPLICATE
Severity:	normal	CC:	hydrapolic, proxy-maint, ultrabug
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log build.log after rebuilding boost

Description Alexey Skobkin 2017-08-22 09:19:00 UTC

Created attachment 490048 [details]
build.log

When I trying to build mongodb-3.4.6 the error (see build log) occurs.


Portage 2.3.8 (python 3.4.6-final-0, default/linux/amd64/13.0/systemd, gcc-6.4.0, glibc-2.25-r4, 4.12.5-gentoo-skobkin x86_64)
=================================================================
System uname: Linux-4.12.5-gentoo-skobkin-x86_64-Intel-R-_Core-TM-_i7-4820K_CPU_@_3.70GHz-with-gentoo-2.4.1
KiB Mem:    32879848 total,  25583172 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Tue, 22 Aug 2017 07:45:01 +0000
Head commit of repository gentoo: 63ef41c718a62fa23050d4f8abc9086b0e02feea
Head commit of repository tox-overlay: 8037d84a8fa2f8179a147f7d20276763ed3540d2

sh bash 4.4_p12
ld GNU ld (Gentoo 2.28.1 p1.0) 2.28.1
distcc 3.2rc1 x86_64-pc-linux-gnu [disabled]
ccache version 3.3.4 [disabled]
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.2::gentoo
dev-lang/python:          2.7.13::gentoo, 3.4.6::gentoo, 3.5.3::gentoo
dev-util/ccache:          3.3.4::gentoo
dev-util/cmake:           3.9.1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r1::gentoo
sys-apps/openrc:          0.29::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.13.4-r1::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.28.1::gentoo
sys-devel/gcc:            6.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1-r1::gentoo
sys-kernel/linux-headers: 4.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.ru.gentoo.org/gentoo-portage
    priority: -1000

angelos
    location: /var/lib/layman/angelos
    sync-type: laymansync
    sync-uri: git://anongit.gentoo.org/dev/angelos.git
    masters: gentoo
    priority: 50

hsoft
    location: /var/lib/layman/hsoft
    sync-type: laymansync
    sync-uri: git://github.com/hsoft/portage-overlay.git
    masters: gentoo hsoft
    priority: 50

jorgicio
    location: /var/lib/layman/jorgicio
    masters: gentoo
    priority: 50

mva
    location: /var/lib/layman/mva
    sync-type: laymansync
    sync-uri: https://github.com/msva/mva-overlay
    masters: gentoo
    priority: 50

obs-studio-overlay
    location: /var/lib/layman/obs-studio-overlay
    masters: gentoo
    priority: 50

rasdark
    location: /var/lib/layman/rasdark
    sync-type: laymansync
    sync-uri: https://github.com/rasdark/overlay
    masters: gentoo
    priority: 50

rindeal
    location: /var/lib/layman/rindeal
    sync-type: laymansync
    sync-uri: https://github.com/rindeal/gentoo-overlay.git
    masters: gentoo
    priority: 50

ring-overlay
    location: /var/lib/layman/ring-overlay
    sync-type: laymansync
    sync-uri: https://github.com/stefan-langenmaier/ring-overlay.git
    masters: gentoo
    priority: 50

rion
    location: /var/lib/layman/rion
    sync-type: laymansync
    sync-uri: https://github.com/rion-overlay/rion-overlay.git
    masters: gentoo
    priority: 50

steam-overlay
    location: /var/lib/layman/steam-overlay
    masters: gentoo
    priority: 50

tox-overlay
    location: /var/lib/layman/tox-overlay
    sync-type: git
    sync-uri: git://github.com/Tox/gentoo-overlay-tox.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/apache2-php7.1/ext-active/ /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=native -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs cgroup compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news nodoc parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.yandex.ru/gentoo-distfiles/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j8"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/tmp"
USE="X a52 aac acl acpi amd64 avx bash-completion bluetooth branding bzip2 cli cracklib crypt cups curl curlwrappers cxx dbus dga djvu dri dts dv exif fbcon ffmpeg flac fortran gif git gnutls gpm gtk gtk3 gzip hddtemp iconv idn imagemagick inotify ipv6 jabber jit jpeg lame lcms libass libnotify lm_sensors lzma lzo mad matroska mhash mime mmap mmx mmxext modemmanager modules mp3 mp4 mpeg mplayer multilib ncurses networkmanager nls nptl ogg opengl openmp pam pango pch pcre pdf plasma png policykit posix pulseaudio qt5 raw readline samba sasl sdl seccomp session sharedmem smp sockets sound spell sse sse2 sse3 sse4_1 ssl ssse3 startup-notification svg syslog systemd taglib tcmalloc tcpd theora threads truetype udev udisks unicode upnp upnp-av upower usb v4l vhosts videos vnc vorbis x264 x265 xattr xcb xcomposite xft xinerama xmpp xv xvid xvmc zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" ENLIGHTENMENT_MODULES="conf conf-window-manipulation conf-window-remembers" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-1" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4 python3_5" QEMU_SOFTMMU_TARGETS="x86_64 arm" QEMU_USER_TARGETS="x86_64 arm" RUBY_TARGETS="ruby23 ruby24" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Comment 1 Tomáš Mózes 2017-08-22 16:36:53 UTC

Try rebuilding boost and then re-emerge mongodb.

Comment 2 Alexey Skobkin 2017-08-23 17:13:26 UTC

> Try rebuilding boost and then re-emerge mongodb.
It didn't help. But seems like the log is slightly different.

Comment 3 Alexey Skobkin 2017-08-23 17:13:56 UTC

Created attachment 490320 [details]
build.log after rebuilding boost

Comment 4 Tomáš Mózes 2017-08-24 06:19:43 UTC

That's because of your glibc version removing sysmacros.h include: https://bugs.gentoo.org/show_bug.cgi?id=575232

Seems like mmap_v1_engine.cpp needs to include sys/sysmacros.h.

Comment 5 Tomáš Mózes 2017-08-24 06:21:07 UTC


*** This bug has been marked as a duplicate of bug 580768 ***