Bug 623260

Summary:	sci-libs/parmgridgen-1.0 : fails with FEATURES=test
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Patrick Lauer <patrick>
Status:	RESOLVED OBSOLETE
Severity:	normal	CC:	treecleaner
Priority:	Normal	Keywords:	PMASKED, TESTFAILURE
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Deadline:	2019-10-28
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tbz2 logs.tbz2 sci-libs:parmgridgen-1.0:20170701-115942.log temp.tbz2 tests.tbz2

Description Toralf Förster gentoo-dev

2017-07-01 14:18:07 UTC

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 13.0-systemd_20170628-214240

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-6.3.0 *

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby21 (with Rubygems) *
  [2]   ruby22 (with Rubygems)

Comment 1 Toralf Förster gentoo-dev

2017-07-01 14:18:12 UTC

Created attachment 478550 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2017-07-01 14:18:15 UTC

Created attachment 478552 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2017-07-01 14:18:18 UTC

Created attachment 478554 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2017-07-01 14:18:22 UTC

Created attachment 478556 [details]
etc.portage.tbz2

Comment 5 Toralf Förster gentoo-dev

2017-07-01 14:18:25 UTC

Created attachment 478558 [details]
logs.tbz2

Comment 6 Toralf Förster gentoo-dev

2017-07-01 14:18:28 UTC

Created attachment 478560 [details]
sci-libs:parmgridgen-1.0:20170701-115942.log

Comment 7 Toralf Förster gentoo-dev

2017-07-01 14:18:31 UTC

Created attachment 478562 [details]
temp.tbz2

Comment 8 Toralf Förster gentoo-dev

2017-07-01 14:18:34 UTC

Created attachment 478564 [details]
tests.tbz2

Comment 9 Patrick Lauer gentoo-dev

2018-05-20 07:22:03 UTC

make[3]: Entering directory '/var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs'
mpirun -np 4 parmgridgen ../../Graphs/M6.metis 3 4 6 1 4 128
[localhost:23546] *** Process received signal ***
[localhost:23546] Signal: Segmentation fault (11)
[localhost:23546] Signal code: Address not mapped (1)
[localhost:23546] Failing at address: 0xffffffff99287f90
[localhost:23541] *** Process received signal ***
[localhost:23541] Signal: Segmentation fault (11)
[localhost:23541] Signal code: Address not mapped (1)
[localhost:23541] Failing at address: 0xffffffffc582cbb0
[localhost:23553] *** Process received signal ***
[localhost:23553] Signal: Segmentation fault (11)
[localhost:23553] Signal code: Address not mapped (1)
[localhost:23553] Failing at address: 0xffffffff94069f90
[localhost:23542] *** Process received signal ***
[localhost:23542] Signal: Segmentation fault (11)
[localhost:23542] Signal code: Address not mapped (1)
[localhost:23542] Failing at address: 0x77d2f020
[localhost:23546] [ 0] /lib64/libpthread.so.0(+0x14100)[0x7eff9655c100]
[localhost:23546] [ 1] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___InitGraph+0x7)[0x7eff95b50c07]
[localhost:23546] [ 2] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___CreateGraph+0x1f)[0x7eff95b50d6f]
[localhost:23553] [ 0] /lib64/libpthread.so.0(+0x14100)[0x7fc753aa4100]
[localhost:23553] [ 1] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___InitGraph+0x7)[0x7fc753098c07]
[localhost:23553] [ 2] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___CreateGraph+0x1f)[0x7fc753098d6f]
[localhost:23553] [ 3] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___SetUpGraph+0x27)[0x7fc753098237]
[localhost:23553] [ 4] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(ParMETIS_FusedElementGraph+0x11c)[0x7fc75309805c]
[localhost:23553] [ 5] [localhost:23546] [ 3] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___SetUpGraph+0x27)[0x7eff95b50237]
[localhost:23546] [ 4] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(ParMETIS_FusedElementGraph+0x11c)[0x7eff95b5005c]
[localhost:23546] [ 5] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(MoveRefine+0x498)[0x7eff96c74dd8]
[localhost:23546] [ 6] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(ParMGridGen+0x4bf)[0x7eff96c766ef]
[localhost:23546] [ 7] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x2514)[0x5574988a1514]
[localhost:23546] [ 8] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x1539)[0x5574988a0539]
[localhost:23546] [ 9] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(MoveRefine+0x498)[0x7fc7541bcdd8]
[localhost:23553] [ 6] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(ParMGridGen+0x4bf)[0x7fc7541be6ef]
[localhost:23553] [ 7] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x2514)[0x557a9268c514]
[localhost:23553] [ 8] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x1539)[0x557a9268b539]
[localhost:23553] [ 9] [localhost:23542] [ 0] /lib64/libpthread.so.0(+0x14100)[0x7f750821c100]
[localhost:23542] [ 1] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___InitGraph+0x7)[0x7f7507810c07]
[localhost:23541] [ 0] /lib64/libpthread.so.0(+0x14100)[0x7f26bdf24100]
[localhost:23541] [ 1] /lib64/libc.so.6(__libc_start_main+0xee)[0x7eff961a28be]
[localhost:23546] [10] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x159a)[0x5574988a059a]
[localhost:23546] *** End of error message ***
/lib64/libc.so.6(__libc_start_main+0xee)[0x7fc7536ea8be]
[localhost:23553] [10] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x159a)[0x557a9268b59a]
[localhost:23553] *** End of error message ***
[localhost:23542] [ 2] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___CreateGraph+0x1f)[0x7f7507810d6f]
[localhost:23542] [ 3] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___SetUpGraph+0x27)[0x7f7507810237]
[localhost:23542] [ 4] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(ParMETIS_FusedElementGraph+0x11c)[0x7f750781005c]
[localhost:23542] [ 5] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(MoveRefine+0x498)[0x7f7508934dd8]
[localhost:23542] [ 6] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(ParMGridGen+0x4bf)[0x7f75089366ef]
/var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___InitGraph+0x7)[0x7f26bd518c07]
[localhost:23541] [ 2] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___CreateGraph+0x1f)[0x7f26bd518d6f]
[localhost:23541] [ 3] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(___SetUpGraph+0x27)[0x7f26bd518237]
[localhost:23541] [ 4] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/IMParMetis-2.0/ParMETISLib/.libs/libIMparmetis.so.1(ParMETIS_FusedElementGraph+0x11c)[0x7f26bd51805c]
[localhost:23541] [ 5] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(MoveRefine+0x498)[0x7f26be63cdd8]
[localhost:23541] [ 6] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/ParLib/.libs/libParMGridGen.so.1(ParMGridGen+0x4bf)[0x7f26be63e6ef]
[localhost:23541] [ 7] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x2514)[0x5576c536c514]
[localhost:23541] [ 8] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x1539)[0x5576c536b539]
[localhost:23541] [ 9] [localhost:23542] [ 7] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x2514)[0x55dd76fde514]
[localhost:23542] [ 8] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x1539)[0x55dd76fdd539]
[localhost:23542] [ 9] /lib64/libc.so.6(__libc_start_main+0xee)[0x7f7507e628be]
[localhost:23542] [10] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x159a)[0x55dd76fdd59a]
[localhost:23542] *** End of error message ***
/lib64/libc.so.6(__libc_start_main+0xee)[0x7f26bdb6a8be]
[localhost:23541] [10] /var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs/.libs/parmgridgen(+0x159a)[0x5576c536b59a]
[localhost:23541] *** End of error message ***
-------------------------------------------------------
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 2 with PID 0 on node localhost exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
make[3]: *** [Makefile:659: check-local] Error 139
make[3]: Leaving directory '/var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs'
make[2]: *** [Makefile:527: check-am] Error 2
make[2]: Leaving directory '/var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen/Programs'
make[1]: *** [Makefile:349: check-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-libs/parmgridgen-1.0-r1/work/ParMGridGen-1.0/ParMGridGen'
make: *** [Makefile:452: check-recursive] Error 1
 * ERROR: sci-libs/parmgridgen-1.0-r1::gentoo failed (test phase):
 *   Make check failed. See above for details.

Comment 10 Michał Górny archtester

2019-10-31 15:36:47 UTC

Package removed.