| Summary: | openbabel-python-2.4.1 tries to install files outside of prefix | ||
|---|---|---|---|
| Product: | Gentoo/Alt | Reporter: | nanikata15 |
| Component: | Prefix Support | Assignee: | Gentoo Prefix <prefix> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: | emerge --info '=sci-chemistry/openbabel-python-2.4.1::gentoo' | ||
Created attachment 474000 [details]
emerge --info '=sci-chemistry/openbabel-python-2.4.1::gentoo'
Have you tried this without the install_prefix changed, e.g. like this:?
--- a/sci-chemistry/openbabel-python/openbabel-python-2.4.1.ebuild
+++ b/sci-chemistry/openbabel-python/openbabel-python-2.4.1.ebuild
@@ -54,11 +54,11 @@ src_configure() {
-DBINDINGS_ONLY=ON
-DBABEL_SYSTEM_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libopenbabel.so"
-DOB_MODULE_PATH="${EPREFIX}/usr/$(get_libdir)/openbabel/${PV}"
- -DLIB_INSTALL_DIR="${D}$(python_get_sitedir)"
+ -DLIB_INSTALL_DIR="${ED}$(python_get_sitedir)"
-DPYTHON_BINDINGS=ON
-DPYTHON_EXECUTABLE=${PYTHON}
- -DPYTHON_INCLUDE_DIR="$(python_get_includedir)"
- -DPYTHON_INCLUDE_PATH="$(python_get_includedir)"
+ -DPYTHON_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)"
+ -DPYTHON_INCLUDE_PATH="${EPREFIX}$(python_get_includedir)"
-DPYTHON_LIBRARY="$(python_get_library_path)"
-DENABLE_TESTS=ON
-DCMAKE_INSTALL_PREFIX="${D}"
Could you run emerge with above patch and report the collisions please?
It did not compile with the additional "${EPREFIX}" in DPYTHON_INCLUDE_DIR and DPYTHON_INCLUDE_PATH, because it couldn't find Python.h.
Apparently prefix already gets appended in python_get_includedir,
so you get double-prefixed paths.
I re-emerged the package with only -DLIB_INSTALL_DIR="${ED}$(python_get_sitedir)" changed, and got the same error message as in the initial report.
I compared build.logs of both the vanilla ebuild and the one with -DLIB_INSTALL_DIR="${ED}$(python_get_sitedir)", and they appeared identical, except the outputted LIB_INSTALL_DIR in the latter ebuild had a too many prefixes in the path:
-DLIB_INSTALL_DIR=/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/image//home/nanikata/gentoorap/usr/lib64/python3.4/site-packages
-DLIB_INSTALL_DIR=/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/image/home/nanikata/gentoorap//home/nanikata/gentoorap/usr/lib64/python3.4/site-packages
Is LIB_INSTALL_DIR getting ignored?
Thanks for testing and reporting. This feels like the options aren't respected very well indeed. thanks, pushed. |
When emerging openbabel-python in my gentoo-rap prefix, I get the following error: >>> Completed installing openbabel-python-2.4.1 into /home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/image/ * Final size of build directory: 117288 KiB * Final size of installed tree: 8180 KiB * QA Notice: the following files are outside of the prefix: * /lib64 * /lib64/python2.7 * /lib64/python2.7/site-packages * /lib64/python2.7/site-packages/_openbabel.so * /lib64/python2.7/site-packages/openbabel.py * /lib64/python2.7/site-packages/pybel.py * /lib64/python3.4 * /lib64/python3.4/site-packages * /lib64/python3.4/site-packages/_openbabel.so * /lib64/python3.4/site-packages/openbabel.py * /lib64/python3.4/site-packages/pybel.py * ERROR: sci-chemistry/openbabel-python-2.4.1::gentoo failed: * Aborting due to QA concerns: there are files installed outside the prefix * * Call stack: * misc-functions.sh, line 603: Called install_qa_check * misc-functions.sh, line 217: Called source 'install_symlink_html_docs' * 05prefix, line 114: Called install_qa_check_prefix * 05prefix, line 27: Called die * The specific snippet of code: * die "Aborting due to QA concerns: there are files installed outside the prefix" * * If you need support, post the output of `emerge --info '=sci-chemistry/openbabel-python-2.4.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/openbabel-python-2.4.1::gentoo'`. * The complete build log is located at '/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/temp/build.log'. * The ebuild environment file is located at '/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/temp/environment'. * Working directory: '/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/image/home/nanikata/gentoorap' * S: '/home/nanikata/gentoorap/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1/work/openbabel-2.4.1' I was able to emerge this package without problem when I changed "${D}" to "${ED}" in -DLIB_INSTALL_DIR and -DCMAKE_INSTALL_PREFIX arguments to cmake inside the ebuild, but I don't have enough knowledge about cmake to say if it is the correct solution. I did not have this problem with openbabel-python-2.3.2, so maybe this is caused by the new -DCMAKE_INSTALL_PREFIX parameter in openbabel-python-2.4.1?