Bug 616138 – dev-python/pandas: Garbage in messages

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Martin Mokrejš 2017-04-20 16:58:24 UTC]

What's this?

>>> Installing (4 of 5) dev-python/pandas-0.19.1::gentoo
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3093: =dev-python/numexpr-2.1: No such file or directory
 *   dev-python/blosc for for msgpack compression using blosc
 *   dev-python/boto for necessary for Amazon S3 access
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3097: =dev-python/google-api-python-client-1.2.0: No such file or directory
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3100: =dev-python/openpyxl-1.6.1: No such file or directory
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3101: =dev-python/pytables-3.2.1: No such file or directory
 *   dev-python/rpy for R I/O support
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3103: pandas.stats: command not found
 *   dev-python/statsmodels for Needed for parts of :mod:
/scratch/var/tmp/portage/dev-python/pandas-0.19.1/temp/environment: line 3104: =dev-python/sqlalchemy-0.8.1: No such file or directory

 # emerge --info
Portage 2.3.5 (python 2.7.13-final-0, default/linux/amd64/13.0, gcc-4.9.4, glibc-2.24-r1, 4.10.8-default-pciehp x86_64)
=================================================================
System uname: Linux-4.10.8-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.3
KiB Mem:    16366672 total,   1268920 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 13 Apr 2017 20:00:01 +0000
sh bash 4.4_p12
ld GNU ld (Gentoo 2.27 p1.0) 2.27
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.1-r1::gentoo
dev-lang/python:          2.7.13::gentoo, 3.4.5::gentoo, 3.5.3::gentoo, 3.6.1::gentoo
dev-util/cmake:           3.8.0::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.24.2::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r2::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo, 2.26.1::gentoo, 2.27::gentoo
sys-devel/gcc:            4.3.6-r1::gentoo, 4.4.7::gentoo, 4.6.4::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.4::gentoo, 5.3.0::gentoo, 5.4.0-r3::gentoo, 6.2.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.24-r1::gentoo
Repositories:

gentoo
    location: /scratch/usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

science
    location: /scratch/mmokrejs/proj/sci
    masters: gentoo
    priority: 0

layman
    location: /var/lib/layman
    masters: gentoo
    priority: 1

haskell
    location: /var/lib/layman/haskell
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x OPERA-2014 RAR"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.2/conf /usr/share/maven-bin-3.3/conf /var/bind /var/lib/hsqldb /var/spool/torque"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -maes -mpclmul -mpopcnt -mavx -march=native"
DISTDIR="/scratch/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/scratch/var/tmp"
USE="R X acpi alsa amd64 amr apache apache2 apulse asm avx berkdb bindist bluetooth boost bzip2 cairo cgi cli coin consolekit cracklib crypt cryptlib cryptsetup cups cxx dbus device-mapper dhcp directfb dri drm dvd emboss encode fax fbcon ffmpeg flac fontconfig fortran gbm gcrypt gd gdbm geoip gimp glpk gmp gnutls gpm gtk hal hpijs hwdb iconv id3tag imaging innodb inotify java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack laptop lcms libnotify lm_sensors mad matroska mmx modemmanager modules mpi mpich2 multicore multilib multimedia mysql ncurses networkmanager nfs nls nptl nptlonly nscd ntfs ntfsdecrypt ntfsprogs objc ocr ogg opengl openmp pam parport pcre pdf pdfimport pdl perl php plplot png policykit polkit postproc postscript ppds ppp pppd pptx python qt3support qt4 qt5 readline rendering resolvconf samba scanner sctp seccomp server session sha512 slideshow sna sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssh ssh-agent ssl ssse3 startup-notification suexec svg syslog tcl tcpd threads tiff tk truetype udev unicode upower usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xattr xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en-US en en-GB cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US en_GB en cs" OFFICE_IMPLEMENTATION="libreoffice" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby21 ruby23 ruby24" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915 i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
USE_PYTHON="2.7"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Arfrever Frehtes Taifersar Arahesis 2017-06-05 08:25:32 UTC]

Strings with < or > need to be quoted to avoid interpretation by shell as redirection.

pkg_postinst() of ebuilds since dev-python/pandas-0.17.1 has this problem.

[Comment 2 Arfrever Frehtes Taifersar Arahesis 2017-06-05 08:27:52 UTC]

And do not use unnecessary ` (even quoted) in strings.

[Comment 3 Arfrever Frehtes Taifersar Arahesis 2017-06-05 08:31:31 UTC]

Remember to drop useless :mod: and ~

[Comment 4 Justin Lecher (RETIRED) 2017-06-24 19:51:29 UTC]

ommit 5a089394f846149c267c3d067792818c982455c5
Author: Justin Lecher <[e-mail]>
Date:   Sat Jun 24 21:50:55 2017 +0200

    dev-python/pandas: Fix quoting for bash safety

    Thanks Arfrever pointing to this
    Some cosmetic changes in wording

    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=616138
    Package-Manager: Portage-2.3.3, Repoman-2.3.2
    Signed-off-by: Justin Lecher <[e-mail]>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5a089394f846149c267c3d067792818c982455c5

[Comment 5 Arfrever Frehtes Taifersar Arahesis 2017-06-26 08:36:56 UTC]

As said above, please drop ` characters in these messages:

- optfeature "for msgpack compression using ``blosc``" dev-python/blosc
+ optfeature "for msgpack compression using blosc" dev-python/blosc

- optfeature "Needed for parts of `pandas.stats`" dev-python/statsmodels
+ optfeature "Needed for parts of pandas.stats" dev-python/statsmodels


`` results in execution of empty command (with no output), but `pandas.stats` results in "pandas.stats: command not found" on stderr.

[Comment 6 Justin Lecher (RETIRED) 2017-06-27 09:36:33 UTC]

commit c59e7321fc209995d6727defe1a4fcee896df715
Author: Justin Lecher <[e-mail]>
Date:   Tue Jun 27 10:14:46 2017 +0100

    dev-python/pandas: Drop backticks

    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=616138
    Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2
    Signed-off-by: Justin Lecher <[e-mail]>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c59e7321fc209995d6727defe1a4fcee896df715